Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EXIG_RS10465 Genome accession   NC_010556
Coordinates   1996937..1998739 (-) Length   600 a.a.
NCBI ID   WP_012370915.1    Uniprot ID   -
Organism   Exiguobacterium sibiricum 255-15     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1991937..2003739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXIG_RS10440 (Exig_2040) - 1992840..1993721 (-) 882 WP_012370910.1 RluA family pseudouridine synthase -
  EXIG_RS10445 (Exig_2041) - 1993739..1994542 (-) 804 WP_012370911.1 NAD kinase -
  EXIG_RS10450 (Exig_2042) - 1994553..1995203 (-) 651 WP_012370912.1 GTP pyrophosphokinase family protein -
  EXIG_RS10455 (Exig_2043) - 1995309..1995884 (+) 576 WP_234944530.1 CYTH domain-containing protein -
  EXIG_RS10460 (Exig_2044) - 1995976..1996767 (+) 792 WP_012370914.1 DsbA family protein -
  EXIG_RS10465 (Exig_2045) pepF 1996937..1998739 (-) 1803 WP_012370915.1 oligoendopeptidase F Regulator
  EXIG_RS10470 (Exig_2046) - 1998745..1999812 (-) 1068 WP_012370916.1 competence protein CoiA family protein -
  EXIG_RS10475 (Exig_2047) cls 1999824..2001335 (-) 1512 WP_012370917.1 cardiolipin synthase -
  EXIG_RS10480 (Exig_2048) - 2001397..2002119 (+) 723 WP_012370918.1 SDR family NAD(P)-dependent oxidoreductase -
  EXIG_RS10485 (Exig_2049) mecA 2002190..2002816 (-) 627 WP_012370919.1 adaptor protein MecA -
  EXIG_RS10490 (Exig_2050) spxA 2002986..2003384 (-) 399 WP_012370920.1 transcriptional regulator SpxA -
  EXIG_RS15945 (Exig_2051) - 2003559..2003696 (-) 138 WP_012370921.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68807.34 Da        Isoelectric Point: 4.6791

>NTDB_id=30526 EXIG_RS10465 WP_012370915.1 1996937..1998739(-) (pepF) [Exiguobacterium sibiricum 255-15]
MAEVLTRKDVKQEETWNLESIYETNEKWEEEFESVKAMLPLLVEYKGRLAQSDATLFEGLQLRDEISRRLHKLYTYAHMR
YDENTADSFYQAMNDRARTLASQIGATLAFMTPELLEVPEETIASYLDQNPDLALYRHAFDELNREREHVLSEAEEAILA
KAGEVLGQSGTTFGMLNNADMKFPKIKGEDGEEAELTHGRFITFMESKDRSVREAAFKAMYGTYSQYTNTLASTLAGSVK
KDNFYAEVRKFKTARESALHGNTIPEQVYDGLIEAVHEHLPLLHRYVALRKRILGVDELHMYDMYTPLVSEVEMKISYEE
AKQLMVDGLAPLGPEYKHILEEGLAERWVDVRETRGKRSGAYSSGAYDTQPFILMNWQDNVNNLFTLAHEFGHSVHSYYT
RQNQPYAYGDYSIFVAEVASTTNEALLNDYLLKRVTDKNEKLYLLNNQLETFRGTLFRQTMFAEFEHQIHEAARLGQALT
PEFLTKTYYALNKTYFGDGIVLDEEIGLEWARIPHFYYNYYVYQYATGISAAAALTSQILEEGEPAVERYINNFLKAGSS
DYPIEVLKAAGVDMTTKAPVEAALRQFERVLDEFEALLGE

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=30526 EXIG_RS10465 WP_012370915.1 1996937..1998739(-) (pepF) [Exiguobacterium sibiricum 255-15]
ATGGCAGAAGTATTAACACGAAAAGACGTCAAGCAGGAAGAGACGTGGAATTTAGAATCCATTTACGAAACGAATGAGAA
ATGGGAAGAAGAGTTTGAGTCAGTGAAAGCGATGCTTCCGCTACTCGTCGAGTATAAGGGACGTCTTGCACAGTCGGATG
CCACTTTATTTGAAGGACTTCAACTTCGGGACGAAATCTCAAGACGGCTGCATAAGCTCTATACATATGCACATATGCGT
TACGATGAGAACACGGCCGACAGCTTTTATCAGGCGATGAATGACCGTGCCCGGACGCTCGCTTCGCAAATTGGAGCGAC
GCTCGCTTTCATGACACCCGAGCTGTTGGAAGTTCCAGAAGAAACAATTGCCTCGTACTTGGATCAGAATCCGGATCTCG
CCCTTTACCGTCATGCGTTCGATGAGTTGAACCGTGAGCGGGAACACGTCTTATCGGAAGCGGAAGAGGCGATTCTTGCA
AAAGCAGGCGAAGTCCTTGGACAGTCGGGAACGACGTTTGGCATGCTGAATAATGCGGATATGAAATTCCCGAAAATCAA
AGGCGAGGACGGGGAAGAGGCGGAATTGACACACGGGCGGTTCATCACGTTCATGGAGTCAAAAGATCGTTCCGTCCGTG
AGGCGGCGTTTAAAGCCATGTATGGAACGTATAGCCAGTATACAAATACATTGGCGTCTACGTTAGCCGGTTCCGTCAAA
AAAGATAACTTTTATGCTGAGGTCCGGAAATTTAAAACAGCACGCGAATCAGCGTTACATGGAAACACGATTCCGGAACA
GGTATATGACGGATTGATCGAAGCGGTTCATGAACACCTTCCGTTGTTACACCGGTATGTTGCTTTACGTAAACGGATTT
TAGGTGTCGATGAACTGCATATGTATGATATGTACACACCACTGGTCAGTGAAGTGGAAATGAAGATCTCGTACGAAGAA
GCAAAACAGTTGATGGTGGACGGATTAGCGCCACTAGGACCTGAATACAAACATATTCTTGAAGAAGGTCTTGCAGAACG
CTGGGTCGATGTCCGTGAAACACGGGGGAAACGGAGTGGTGCCTATTCTTCAGGCGCGTACGATACGCAACCGTTCATCT
TGATGAACTGGCAGGATAACGTCAACAACTTGTTTACGTTAGCACACGAGTTCGGACACTCGGTTCACAGCTACTATACA
CGTCAGAATCAACCCTATGCCTACGGAGATTATTCAATTTTTGTAGCAGAGGTTGCGTCGACGACAAACGAAGCACTTTT
AAATGATTACCTGTTAAAACGTGTGACAGATAAAAATGAGAAATTGTATCTCCTCAACAATCAATTGGAAACATTCCGCG
GAACATTATTCCGTCAGACGATGTTTGCCGAGTTTGAACATCAAATTCATGAGGCAGCTCGACTTGGACAAGCACTGACA
CCTGAATTCTTAACGAAGACGTATTATGCACTAAATAAAACGTATTTCGGTGATGGTATTGTATTAGATGAAGAAATCGG
TTTGGAGTGGGCACGTATCCCGCATTTCTATTACAATTACTATGTCTATCAGTATGCGACAGGCATTTCTGCTGCCGCAG
CGCTGACTTCACAAATCCTAGAAGAAGGGGAGCCAGCGGTCGAGCGGTATATCAATAACTTCCTCAAAGCAGGATCAAGT
GATTATCCGATTGAAGTTCTGAAAGCGGCCGGCGTTGATATGACGACGAAAGCACCGGTTGAAGCTGCTCTTCGTCAATT
CGAACGGGTACTCGATGAATTTGAAGCATTACTCGGAGAATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-585)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.324

98.667

0.487

Multiple sequence alignment