Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA07_RS16345 Genome accession   NZ_CP035819
Coordinates   3396537..3397013 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain WS3294A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3391537..3402013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA07_RS16320 - 3391704..3394220 (+) 2517 WP_216350846.1 hypothetical protein -
  EXA07_RS16325 - 3394296..3394751 (+) 456 WP_000581504.1 IrmA family protein -
  EXA07_RS16330 - 3394830..3395063 (+) 234 WP_001119729.1 DUF905 family protein -
  EXA07_RS16335 - 3395163..3395981 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  EXA07_RS16340 - 3396036..3396521 (+) 486 WP_000849588.1 antirestriction protein -
  EXA07_RS16345 radC 3396537..3397013 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  EXA07_RS16350 - 3397076..3397297 (+) 222 WP_000692341.1 DUF987 domain-containing protein -
  EXA07_RS16355 - 3397460..3397828 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA07_RS16360 - 3397918..3398292 (+) 375 WP_000854765.1 TA system toxin CbtA family protein -
  EXA07_RS16365 - 3398289..3398780 (+) 492 WP_000976842.1 DUF5983 family protein -
  EXA07_RS16370 - 3398797..3398973 (+) 177 WP_000839290.1 DUF957 domain-containing protein -
  EXA07_RS16375 - 3399079..3399228 (+) 150 Protein_3207 hypothetical protein -
  EXA07_RS25960 - 3399198..3399332 (+) 135 Protein_3208 transcriptional regulator -
  EXA07_RS16385 - 3400359..3400529 (+) 171 Protein_3210 fimbrial protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=305253 EXA07_RS16345 WP_001186774.1 3396537..3397013(+) (radC) [Escherichia coli strain WS3294A]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305253 EXA07_RS16345 WP_001186774.1 3396537..3397013(+) (radC) [Escherichia coli strain WS3294A]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment