Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   DWB91_RS04345 Genome accession   NZ_CP031266
Coordinates   910123..911166 (+) Length   347 a.a.
NCBI ID   WP_037566929.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain 12B     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 905123..916166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB91_RS04315 (DWB91_04320) - 905640..906371 (+) 732 WP_145051470.1 type 1 glutamine amidotransferase -
  DWB91_RS04320 (DWB91_04325) - 906472..907503 (-) 1032 WP_145051473.1 aromatic acid exporter family protein -
  DWB91_RS04325 (DWB91_04330) - 907623..907940 (-) 318 WP_261370712.1 YkvA family protein -
  DWB91_RS04330 (DWB91_04335) map 908169..908927 (+) 759 WP_060551430.1 type I methionyl aminopeptidase -
  DWB91_RS04335 (DWB91_04340) - 909026..909412 (+) 387 WP_086375153.1 hypothetical protein -
  DWB91_RS04340 (DWB91_04345) liaF 909425..910126 (+) 702 WP_060551429.1 cell wall-active antibiotics response protein LiaF -
  DWB91_RS04345 (DWB91_04350) vraS 910123..911166 (+) 1044 WP_037566929.1 sensor histidine kinase Regulator
  DWB91_RS04350 (DWB91_04355) vraR 911156..911785 (+) 630 WP_037566926.1 response regulator transcription factor Regulator
  DWB91_RS04355 (DWB91_04360) - 911851..912420 (-) 570 WP_037566924.1 carbonic anhydrase -
  DWB91_RS04360 (DWB91_04365) - 912456..913727 (-) 1272 WP_060551427.1 YihY/virulence factor BrkB family protein -
  DWB91_RS04365 (DWB91_04370) - 913843..914118 (-) 276 WP_037566921.1 hypothetical protein -
  DWB91_RS04370 (DWB91_04375) - 914126..914584 (-) 459 WP_060551426.1 low molecular weight protein-tyrosine-phosphatase -
  DWB91_RS04375 (DWB91_04380) - 914717..914926 (+) 210 WP_145051476.1 DUF1128 domain-containing protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39917.91 Da        Isoelectric Point: 4.8594

>NTDB_id=305253 DWB91_RS04345 WP_037566929.1 910123..911166(+) (vraS) [Staphylococcus agnetis strain 12B]
MNQYVRSIGSMLILVYSLFTAFFFIDNVFTNIIFFQGMFYTQIFGIPVFLFLNLITIFLCIIVGSVLAYKNNQQNDWLKV
QIERAIEGETVGVNDQQIEIYQETLELYEALVPLNQELHRMRIKTQNLTNESYNINDSKVQKIIEDERHRLARELHDSVS
QQLFAASMMLSAIKETPLEPPLNQQIPTLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIQSLVTDLQRKVPLKVVQDI
GEFDVPKGMEDHLFRITQEAISNTLRHSKGTEVTVELLQREDYILLRIQDDGIGFNVDDKMEQSYGLKNMRERAMEIGAT
FHIVSLPDSGTRIEVKAPLDKEGHNDN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=305253 DWB91_RS04345 WP_037566929.1 910123..911166(+) (vraS) [Staphylococcus agnetis strain 12B]
ATGAATCAATACGTACGATCGATAGGTTCAATGCTTATATTAGTGTATAGCTTATTTACAGCTTTCTTCTTTATAGACAA
TGTATTTACGAATATTATTTTCTTTCAAGGTATGTTTTATACACAAATTTTTGGTATACCTGTGTTTCTGTTTTTAAATC
TTATTACCATATTTTTGTGTATTATTGTTGGAAGTGTACTTGCATATAAAAATAATCAACAAAATGATTGGCTTAAAGTT
CAAATTGAACGTGCGATTGAAGGGGAAACCGTTGGTGTAAATGATCAACAAATTGAAATTTACCAAGAAACATTAGAGCT
TTACGAAGCACTCGTGCCACTGAATCAAGAGTTACATCGCATGCGTATTAAAACGCAAAATTTAACGAATGAATCGTATA
ATATCAATGATTCAAAAGTACAAAAAATTATCGAGGATGAACGTCATCGACTTGCTAGAGAACTTCATGACAGTGTGTCA
CAACAATTATTTGCGGCAAGTATGATGCTTTCTGCAATTAAAGAAACGCCTCTAGAACCCCCATTAAATCAACAAATTCC
GACGCTTGAAAAAATGGTGCAAGATTCACAATTAGAAATGCGCGCGCTGTTATTACATTTAAGACCGATAGGCTTGAAAG
ATAAATCATTAGGTGAAGGTATTCAATCTTTAGTGACGGATTTACAACGTAAAGTTCCATTGAAAGTAGTTCAAGATATC
GGTGAGTTTGATGTACCTAAGGGAATGGAAGACCATTTATTTAGAATTACACAAGAAGCGATTTCTAATACACTCCGTCA
TTCAAAAGGGACTGAAGTGACGGTGGAATTGTTACAACGAGAAGATTACATATTGCTACGCATTCAAGATGATGGTATCG
GATTTAATGTTGATGATAAGATGGAACAAAGTTATGGATTGAAAAATATGCGTGAACGTGCAATGGAAATTGGCGCGACA
TTTCATATCGTATCATTACCGGATTCAGGTACTCGAATTGAAGTGAAAGCACCATTAGATAAGGAGGGACATAATGACAA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

82.133

100

0.821


Multiple sequence alignment