Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   DWB91_RS04035 Genome accession   NZ_CP031266
Coordinates   848161..848883 (-) Length   240 a.a.
NCBI ID   WP_085622894.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain 12B     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 843161..853883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB91_RS04015 (DWB91_04020) - 844098..844733 (+) 636 WP_037567012.1 redox-sensing transcriptional repressor Rex -
  DWB91_RS04020 (DWB91_04025) - 844916..846001 (+) 1086 WP_060551495.1 YeeE/YedE family protein -
  DWB91_RS04025 (DWB91_04030) - 846024..846251 (+) 228 WP_060551494.1 sulfurtransferase TusA family protein -
  DWB91_RS04030 (DWB91_04035) - 846604..848094 (+) 1491 WP_060551493.1 sucrose-6-phosphate hydrolase -
  DWB91_RS04035 (DWB91_04040) agrA 848161..848883 (-) 723 WP_085622894.1 quorum-sensing response regulator AgrA Regulator
  DWB91_RS04040 (DWB91_04045) agrC 848897..850195 (-) 1299 WP_060551491.1 quorum-sensing sensor histidine kinase AgrC -
  DWB91_RS04045 (DWB91_04050) agrD 850225..850359 (-) 135 WP_060551490.1 cyclic lactone autoinducer peptide AgrD -
  DWB91_RS04050 (DWB91_04055) - 850362..850924 (-) 563 Protein_802 accessory gene regulator AgrB -
  DWB91_RS04055 (DWB91_04060) - 851572..852369 (-) 798 WP_060551488.1 carbon-nitrogen family hydrolase -
  DWB91_RS11740 - 852540..853559 (+) 1020 WP_261370711.1 hypothetical protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28212.36 Da        Isoelectric Point: 5.4121

>NTDB_id=305252 DWB91_RS04035 WP_085622894.1 848161..848883(-) (agrA) [Staphylococcus agnetis strain 12B]
MKILICEDDPKQRERMESIIQNYIMIEEKPMEIEISTSDPYALLEASKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDIDELRTRIIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDGRFFRCHNSFVLNRHNITHVDAKERIVYFKNDEFCYVSVRNIKKIKK

Nucleotide


Download         Length: 723 bp        

>NTDB_id=305252 DWB91_RS04035 WP_085622894.1 848161..848883(-) (agrA) [Staphylococcus agnetis strain 12B]
TTGAAAATTTTAATTTGTGAGGATGACCCTAAACAAAGAGAACGAATGGAATCCATCATTCAGAATTACATTATGATTGA
AGAAAAGCCTATGGAAATTGAAATTTCTACTAGTGACCCCTATGCGTTACTTGAGGCATCCAAAAATATGACTGATATTG
GTTGTTATTTTTTAGACATCCAATTGGAATCAGATATTAATGGTATTAAGCTTGGTAGCGAAATTCGAAAACATGATCCT
GTAGGTAATATTATTTTTGTAACCAGTCATAGTGAATTAACCTATTTAACTTTCGTGTATAAACTTGCAGCAATGGATTT
TATTTTTAAAGATGACATTGATGAGTTACGTACGAGAATTATTGATTGTCTCGAAACAGCACTTAAGCGGTTAGATTTAT
TAACAAAAGATAACACAGTAGAAACAATGGAATTAAAACAAGGCAGTAATTCTGTCTATGTTAACTATGATGATGTTATG
TTTTTTGAATCTTCACCTAAATCACATCGTTTGATTGCACATTTAGATAATCGGCAAATTGAATTTTATGGTAATTTAAG
AGAGCTCGCACAAATTGATGGTCGTTTTTTTAGATGTCATAATAGTTTTGTGTTAAATCGACATAACATTACGCATGTTG
ATGCTAAAGAGCGCATTGTTTATTTTAAAAATGATGAATTTTGCTATGTGTCTGTAAGAAATATAAAAAAAATCAAAAAA
TAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813

Multiple sequence alignment