Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA07_RS12880 Genome accession   NZ_CP035819
Coordinates   2652456..2653124 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain WS3294A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2647456..2658124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA07_RS12850 rfaQ 2647634..2648692 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  EXA07_RS12855 waaA 2649105..2650382 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EXA07_RS12860 coaD 2650390..2650869 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  EXA07_RS12865 mutM 2650908..2651717 (-) 810 WP_216350829.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EXA07_RS12870 rpmG 2651815..2651982 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  EXA07_RS12875 rpmB 2652003..2652239 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  EXA07_RS12880 radC 2652456..2653124 (-) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  EXA07_RS12885 coaBC 2653296..2654516 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EXA07_RS12890 dut 2654494..2654952 (+) 459 WP_000976070.1 dUTP diphosphatase -
  EXA07_RS12895 slmA 2655059..2655655 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  EXA07_RS12900 pyrE 2655692..2656333 (-) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  EXA07_RS12905 rph 2656399..2657115 (-) 717 WP_001247093.1 ribonuclease PH -
  EXA07_RS12910 yicC 2657242..2658105 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=305232 EXA07_RS12880 WP_001298959.1 2652456..2653124(-) (radC) [Escherichia coli strain WS3294A]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=305232 EXA07_RS12880 WP_001298959.1 2652456..2653124(-) (radC) [Escherichia coli strain WS3294A]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGACTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment