Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EXA07_RS07775 Genome accession   NZ_CP035819
Coordinates   1599567..1600082 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain WS3294A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1594567..1605082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA07_RS07750 ygaZ 1594966..1595703 (+) 738 WP_000445660.1 L-valine exporter subunit YgaZ -
  EXA07_RS07755 ygaH 1595693..1596028 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  EXA07_RS07760 emrR 1596119..1596649 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EXA07_RS07765 emrA 1596776..1597948 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EXA07_RS07770 emrB 1597965..1599503 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EXA07_RS07775 luxS 1599567..1600082 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EXA07_RS07780 gshA 1600232..1601788 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  EXA07_RS07785 yqaA 1601861..1602289 (-) 429 WP_001287457.1 YqaA family protein -
  EXA07_RS07790 yqaB 1602286..1602852 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EXA07_RS07820 csrA 1604445..1604630 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=305209 EXA07_RS07775 WP_001130211.1 1599567..1600082(-) (luxS) [Escherichia coli strain WS3294A]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=305209 EXA07_RS07775 WP_001130211.1 1599567..1600082(-) (luxS) [Escherichia coli strain WS3294A]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731