Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA07_RS04025 Genome accession   NZ_CP035819
Coordinates   811915..812391 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain WS3294A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 806915..817391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA07_RS04005 - 807036..809882 (+) 2847 WP_126735553.1 Ag43/Cah family autotransporter adhesin -
  EXA07_RS04010 - 809953..810148 (+) 196 Protein_795 DUF905 family protein -
  EXA07_RS04015 - 810266..811084 (+) 819 WP_001234719.1 DUF932 domain-containing protein -
  EXA07_RS04020 - 811426..811899 (+) 474 WP_000855059.1 antirestriction protein -
  EXA07_RS04025 radC 811915..812391 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  EXA07_RS04030 - 812454..812675 (+) 222 WP_000692341.1 DUF987 domain-containing protein -
  EXA07_RS04035 - 812838..813206 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA07_RS04040 - 813296..813670 (+) 375 WP_000854762.1 TA system toxin CbtA family protein -
  EXA07_RS04045 - 813667..813819 (+) 153 Protein_802 DUF5983 family protein -
  EXA07_RS04050 - 813919..813999 (+) 81 Protein_803 hypothetical protein -
  EXA07_RS04055 - 814120..814308 (-) 189 Protein_804 IS66 family transposase -
  EXA07_RS04060 - 814369..815502 (+) 1134 WP_126125585.1 IS110-like element ISEc45 family transposase -
  EXA07_RS04070 - 815755..816930 (-) 1176 Protein_806 IS66-like element ISEc23 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=305199 EXA07_RS04025 WP_001186774.1 811915..812391(+) (radC) [Escherichia coli strain WS3294A]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305199 EXA07_RS04025 WP_001186774.1 811915..812391(+) (radC) [Escherichia coli strain WS3294A]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399