Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA08_RS22235 Genome accession   NZ_CP035817
Coordinates   4532277..4532753 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain E7476     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4527277..4537753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA08_RS22195 - 4528761..4528931 (-) 171 Protein_4364 fimbrial protein -
  EXA08_RS22200 - 4528986..4529683 (+) 698 WP_224434063.1 IS1-like element IS1A family transposase -
  EXA08_RS25805 - 4529958..4530092 (-) 135 Protein_4366 transcriptional regulator -
  EXA08_RS22205 - 4530062..4530211 (-) 150 Protein_4367 hypothetical protein -
  EXA08_RS22210 - 4530317..4530493 (-) 177 WP_000839290.1 DUF957 domain-containing protein -
  EXA08_RS22215 - 4530510..4531001 (-) 492 WP_000976842.1 DUF5983 family protein -
  EXA08_RS22220 - 4530998..4531372 (-) 375 WP_000854765.1 TA system toxin CbtA family protein -
  EXA08_RS22225 - 4531462..4531830 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA08_RS22230 - 4531993..4532214 (-) 222 WP_000692311.1 DUF987 domain-containing protein -
  EXA08_RS22235 radC 4532277..4532753 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  EXA08_RS22240 - 4532769..4533254 (-) 486 WP_000849588.1 antirestriction protein -
  EXA08_RS22245 - 4533309..4534127 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  EXA08_RS22250 - 4534227..4534460 (-) 234 WP_001119729.1 DUF905 family protein -
  EXA08_RS22255 - 4534539..4534994 (-) 456 WP_000581504.1 IrmA family protein -
  EXA08_RS22260 - 4535070..4537586 (-) 2517 WP_052907878.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=305181 EXA08_RS22235 WP_001186774.1 4532277..4532753(-) (radC) [Escherichia coli strain E7476]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305181 EXA08_RS22235 WP_001186774.1 4532277..4532753(-) (radC) [Escherichia coli strain E7476]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399