Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DV026_RS16480 Genome accession   NZ_CP031257
Coordinates   3261015..3261611 (-) Length   198 a.a.
NCBI ID   WP_048323585.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain L22     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3256015..3266611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV026_RS16465 helD 3256226..3258280 (-) 2055 WP_049116482.1 DNA helicase IV -
  DV026_RS16470 - 3258405..3258851 (+) 447 WP_004201437.1 YccF domain-containing protein -
  DV026_RS16475 yccS 3258869..3261004 (+) 2136 WP_004201435.1 YccS family putative transporter -
  DV026_RS16480 sxy/tfoX 3261015..3261611 (-) 597 WP_048323585.1 TfoX/Sxy family DNA transformation protein Regulator
  DV026_RS29060 - 3261629..3261934 (-) 306 WP_153351982.1 hypothetical protein -
  DV026_RS16490 sulA 3261960..3262469 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  DV026_RS16495 ompA 3262822..3263892 (+) 1071 WP_002898408.1 porin OmpA -
  DV026_RS16500 matP 3264088..3264540 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  DV026_RS16505 - 3264726..3266483 (+) 1758 WP_048323579.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22579.34 Da        Isoelectric Point: 10.2936

>NTDB_id=305180 DV026_RS16480 WP_048323585.1 3261015..3261611(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain L22]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSARLKDLPNISFHMELQLIHSGIPDVLALRQVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=305180 DV026_RS16480 WP_048323585.1 3261015..3261611(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain L22]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGCACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGCAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment