Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EXA08_RS19130 Genome accession   NZ_CP035817
Coordinates   3891569..3892174 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain E7476     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3886569..3897174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA08_RS19110 aes 3886606..3887565 (+) 960 WP_000801832.1 acetyl esterase -
  EXA08_RS19115 hemH 3887562..3888524 (-) 963 WP_001250088.1 ferrochelatase -
  EXA08_RS19120 adk 3888760..3889404 (-) 645 WP_001220233.1 adenylate kinase -
  EXA08_RS19125 htpG 3889585..3891459 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  EXA08_RS19130 recR 3891569..3892174 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EXA08_RS19135 ybaB 3892174..3892503 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EXA08_RS19140 dnaX 3892556..3894487 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  EXA08_RS19145 apt 3894616..3895167 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EXA08_RS19150 ybaN 3895320..3895697 (-) 378 WP_001188905.1 DUF454 family protein -
  EXA08_RS19155 priC 3895767..3896294 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  EXA08_RS19160 rsmS 3896308..3896469 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EXA08_RS25710 - 3896522..3896620 (-) 99 Protein_3765 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=305172 EXA08_RS19130 WP_001195025.1 3891569..3892174(-) (recR) [Escherichia coli strain E7476]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=305172 EXA08_RS19130 WP_001195025.1 3891569..3892174(-) (recR) [Escherichia coli strain E7476]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443