Detailed information
Bioinformatically predicted
Overview
| Name | pilL-C | Type | Machinery gene |
| Locus tag | VCD_RS10155 | Genome accession | NC_012668 |
| Coordinates | 2157257..2157637 (+) | Length | 126 a.a. |
| NCBI ID | WP_000045526.1 | Uniprot ID | Q6BBL2 |
| Organism | Vibrio cholerae MJ-1236 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2152257..2162637
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VCD_RS10130 (VCD_002945) | - | 2152849..2153505 (+) | 657 | WP_000974695.1 | HEAT repeat domain-containing protein | - |
| VCD_RS10135 (VCD_002946) | - | 2153516..2154361 (+) | 846 | WP_001002907.1 | CheR family methyltransferase | - |
| VCD_RS10140 (VCD_002947) | - | 2154361..2154732 (+) | 372 | WP_000757478.1 | response regulator | - |
| VCD_RS10145 (VCD_002948) | - | 2154741..2157014 (+) | 2274 | WP_001178898.1 | chemotaxis protein CheA | - |
| VCD_RS10150 (VCD_002949) | - | 2157004..2157264 (+) | 261 | WP_001143862.1 | hypothetical protein | - |
| VCD_RS10155 (VCD_002950) | pilL-C | 2157257..2157637 (+) | 381 | WP_000045526.1 | response regulator | Machinery gene |
| VCD_RS10160 (VCD_002951) | - | 2157645..2158880 (+) | 1236 | WP_000621946.1 | methyl-accepting chemotaxis protein | - |
| VCD_RS10165 (VCD_002952) | - | 2158935..2159249 (-) | 315 | WP_000312387.1 | DMT family transporter | - |
| VCD_RS10170 (VCD_002953) | - | 2159395..2160909 (-) | 1515 | WP_000411504.1 | cryptochrome/deoxyribodipyrimidine photo-lyase family protein | - |
| VCD_RS10175 (VCD_002954) | - | 2161065..2162471 (-) | 1407 | WP_000545341.1 | MDR family MFS transporter | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13674.04 Da Isoelectric Point: 9.8959
>NTDB_id=30517 VCD_RS10155 WP_000045526.1 2157257..2157637(+) (pilL-C) [Vibrio cholerae MJ-1236]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
Nucleotide
Download Length: 381 bp
>NTDB_id=30517 VCD_RS10155 WP_000045526.1 2157257..2157637(+) (pilL-C) [Vibrio cholerae MJ-1236]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilL-C | Synechocystis sp. PCC 6803 |
39.2 |
99.206 |
0.389 |