Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DV447_RS19305 Genome accession   NZ_CP031256
Coordinates   3737459..3738088 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain M16807     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3732459..3743088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV447_RS19290 helD 3732701..3734755 (-) 2055 WP_001443200.1 DNA helicase IV -
  DV447_RS19295 yccF 3734878..3735324 (+) 447 WP_001261236.1 YccF domain-containing protein -
  DV447_RS19300 yccS 3735334..3737496 (+) 2163 WP_000875041.1 YccS family putative transporter -
  DV447_RS19305 sxy/tfoX 3737459..3738088 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DV447_RS19310 sulA 3738307..3738816 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  DV447_RS19320 ompA 3739172..3740224 (+) 1053 WP_001528868.1 porin OmpA -
  DV447_RS19325 matP 3740302..3740754 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  DV447_RS19330 ycbZ 3740940..3742700 (+) 1761 WP_000156504.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=305163 DV447_RS19305 WP_000839136.1 3737459..3738088(-) (sxy/tfoX) [Escherichia coli strain M16807]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=305163 DV447_RS19305 WP_000839136.1 3737459..3738088(-) (sxy/tfoX) [Escherichia coli strain M16807]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment