Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA08_RS10870 Genome accession   NZ_CP035817
Coordinates   2233354..2233830 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain E7476     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2228354..2238830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA08_RS10830 - 2229058..2229354 (-) 297 Protein_2117 tyrosine-type recombinase/integrase -
  EXA08_RS10835 - 2229384..2230210 (-) 827 Protein_2118 IS3 family transposase -
  EXA08_RS10840 - 2230260..2231625 (+) 1366 Protein_2119 IS66-like element ISEc23 family transposase -
  EXA08_RS10845 - 2231746..2231826 (-) 81 Protein_2120 hypothetical protein -
  EXA08_RS10850 - 2231926..2232078 (-) 153 Protein_2121 DUF5983 family protein -
  EXA08_RS10855 - 2232075..2232449 (-) 375 WP_000854762.1 TA system toxin CbtA family protein -
  EXA08_RS10860 - 2232539..2232907 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA08_RS10865 - 2233070..2233291 (-) 222 WP_000692341.1 DUF987 domain-containing protein -
  EXA08_RS10870 radC 2233354..2233830 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  EXA08_RS10875 - 2233846..2234319 (-) 474 WP_000855059.1 antirestriction protein -
  EXA08_RS10880 - 2234661..2235479 (-) 819 WP_001234719.1 DUF932 domain-containing protein -
  EXA08_RS10885 - 2235597..2235792 (-) 196 Protein_2128 DUF905 family protein -
  EXA08_RS10890 - 2235863..2238709 (-) 2847 WP_099588437.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=305153 EXA08_RS10870 WP_001186774.1 2233354..2233830(-) (radC) [Escherichia coli strain E7476]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305153 EXA08_RS10870 WP_001186774.1 2233354..2233830(-) (radC) [Escherichia coli strain E7476]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment