Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EXA08_RS10725 Genome accession   NZ_CP035817
Coordinates   2207892..2209319 (-) Length   475 a.a.
NCBI ID   WP_000980632.1    Uniprot ID   -
Organism   Escherichia coli strain E7476     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2202892..2214319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA08_RS10695 yeeZ 2202947..2203771 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  EXA08_RS10700 yeeY 2203817..2204746 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  EXA08_RS10705 yoeI 2204961..2205023 (+) 63 WP_010723108.1 membrane protein YoeI -
  EXA08_RS10710 plaP 2205013..2206371 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EXA08_RS10715 tsuA 2206550..2207608 (+) 1059 WP_000492320.1 thiosulfate utilization transporter TsuA/YeeE -
  EXA08_RS10720 tsuB 2207622..2207849 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EXA08_RS10725 sbcB 2207892..2209319 (-) 1428 WP_000980632.1 exodeoxyribonuclease I Machinery gene
  EXA08_RS10730 dacD 2209528..2210694 (+) 1167 WP_001356285.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EXA08_RS10735 - 2210892..2211410 (+) 519 WP_000115885.1 ClbS/DfsB family four-helix bundle protein -
  EXA08_RS10740 - 2211429..2212649 (+) 1221 WP_000343765.1 ISL3-like element ISEc53 family transposase -
  EXA08_RS10745 sbmC 2212706..2213178 (+) 473 Protein_2100 DNA gyrase inhibitor SbmC -
  EXA08_RS10750 - 2213376..2214015 (+) 640 Protein_2101 FUSC family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54462.72 Da        Isoelectric Point: 5.4720

>NTDB_id=305152 EXA08_RS10725 WP_000980632.1 2207892..2209319(-) (sbcB) [Escherichia coli strain E7476]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQSGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=305152 EXA08_RS10725 WP_000980632.1 2207892..2209319(-) (sbcB) [Escherichia coli strain E7476]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGTCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGTAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATAAATAAATGCCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTACGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment