Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   DV445_RS12505 Genome accession   NZ_CP031255
Coordinates   2464724..2466766 (+) Length   680 a.a.
NCBI ID   WP_114922560.1    Uniprot ID   -
Organism   Neisseria elongata strain M15910     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2459724..2471766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV445_RS12485 - 2460371..2461330 (+) 960 WP_114922558.1 L,D-transpeptidase -
  DV445_RS12490 - 2461493..2461924 (+) 432 WP_114922559.1 acyl-CoA thioesterase -
  DV445_RS12495 - 2462175..2462777 (+) 603 WP_074895429.1 DUF4112 domain-containing protein -
  DV445_RS12500 tldD 2462865..2464310 (-) 1446 WP_107919068.1 metalloprotease TldD -
  DV445_RS13070 - 2464536..2464709 (-) 174 WP_162817037.1 hypothetical protein -
  DV445_RS12505 recG 2464724..2466766 (+) 2043 WP_114922560.1 ATP-dependent DNA helicase RecG Machinery gene
  DV445_RS12510 - 2466936..2468468 (-) 1533 WP_275895486.1 phospholipase D family protein -
  DV445_RS12515 hpnC 2468542..2469357 (-) 816 WP_107885072.1 squalene synthase HpnC -
  DV445_RS12520 pgsA 2469568..2470131 (+) 564 WP_114922561.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75163.08 Da        Isoelectric Point: 6.9307

>NTDB_id=305143 DV445_RS12505 WP_114922560.1 2464724..2466766(+) (recG) [Neisseria elongata strain M15910]
MMTPETQKQLKITDVSAKKLDKLNLNTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVMFKPRKQLIVQI
ADDSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFYGDEMIHPKIRDAEGSGLAESLTPIYPTVNGLNQPTLRRII
QTALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTA
AALGGDGTLTQALRHALPFALTGAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEI
LAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRL
ALKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLI
EESETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERM
GLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEE
DLHLLEQAREIAPLLIEQNPEIVEAHLARWLASREGYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=305143 DV445_RS12505 WP_114922560.1 2464724..2466766(+) (recG) [Neisseria elongata strain M15910]
ATGATGACGCCCGAAACTCAGAAACAGCTCAAAATTACCGACGTTTCCGCCAAGAAGCTTGACAAACTCAACCTCAACAC
CGCGTGGGATTTGGTTTTGCATCTGCCGCTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGATGCGCCGATCG
GCGTGCCGTGTCAGGTCGAGGGCGAGGTCATTCATCAGGAAGTAATGTTCAAACCGCGCAAGCAGCTGATTGTCCAAATC
GCCGACGATTCCGGCAGCGTCCTTTTTCTGCGTTTCATCCACTTTTACGCCAGCAACCAGAAACAGATGGCGGTCGGCAA
ACGCATCCGCGCCGTGGGCGAAATCAAACACGGGTTTTACGGCGACGAGATGATTCATCCCAAAATCCGCGATGCCGAGG
GCAGCGGTTTGGCGGAAAGCCTCACGCCGATTTATCCAACCGTAAACGGCTTGAACCAGCCCACTTTGCGCCGCATCATT
CAGACGGCGTTGGACGTTACGCCGTTGCATGACACCTTGCCCGATGCCTTATTGGGTCGTCTGAAACTGCCGCACCTCGC
CGAAAGCCTGCGCCTTTTGCATTCGCCACCGCCCAGTTTCACCATTCACCAGCTTTCCGACGGCACGCTCCCCGCATGGC
AACGGCTTAAATTCGACGAACTTTTGGCGCAACAGCTTTCCATGCGCTTGGCGCGGCAGAAGCGTGTCAGCGGCACGGCA
GCGGCATTGGGCGGCGACGGCACATTGACCCAAGCCCTGCGCCACGCTTTGCCGTTTGCCCTGACCGGTGCACAAGAAAG
AGTCGTGTCCGAAATCCGCCGCGACATGGCTCAAACCCATCCTATGCACCGCCTGCTGCAAGGTGATGTCGGCAGCGGCA
AAACCATCGTCGCCGCCTTGTCCGCGCTGACCGCCATTGAGTCCGGCGCACAGGTGGCTGTAATGGCGCCGACCGAAATC
CTTGCCGAACAGCATTTCATCAAGTTCAAGCAATGGCTCGAACCGTTAGGCCTCGAAGTCGTCTGGCTTTCCGGCAGCCA
GCGCAAAAAAGCCAAAGACGAGGCCAAAGCCAAACTCGCCGACGGCACCGTCAAAATCGCTGTCGGCACGCACGCCCTGT
TTTCAGACGACGTCGAGTTCCAAAATTTGGGCTTGGTGATTGTGGACGAACAACACCGCTTCGGCGTCGCCCAACGCCTC
GCCCTCAAAAACAAAGGGCGCGACGTCCACCAACTGATGATGTCTGCCACGCCTATCCCGCGCACGCTCGCCATGAGTTT
CTTCGCCGACTTGGACGTGTCCGTCATCGATGAATTGCCGCCCGGGCGCACCCCGATTAAAACCCGCCTCGTCAACAACG
TCCGCCGCGCCGAAGTCGAAGGCTTCGTCCTCAACATCTGCCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATT
GAAGAAAGCGAAACCCTGCAACTGCAAACTGCCACCGAAACCCTCGAGCAGCTTCAGGCAGCCTTGCCCGAACTCAACAT
CGGCTTGGTACACGGGCGCATGAAGGCCGCCGAAAAAGCCGAAGTCATGGCGGAATTTGCCGCAGGCCGTCTGAACGTCT
TGGTCGCCACCACCGTTATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTGATCGAACACGCCGAACGCATG
GGCTTGGCGCAGCTGCACCAATTACGCGGGCGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGCGTCCTCCTGTTTGCCGA
ACCCTTGAGCGAACTCGCCAAAGCGCGGCTGAAAGTCATCTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACC
TCAACATCCGCGGCCCCGGCGAATTTCTCGGCGCGCGCCAAAGCGGCGTCCCCATGCTGCGCTTCGCCAACCTCGAAGAA
GACCTGCACCTCTTGGAACAAGCGCGCGAAATTGCCCCCTTGCTGATTGAACAAAACCCCGAAATCGTCGAAGCGCATCT
GGCAAGGTGGCTTGCCAGCAGGGAAGGCTATTTGGGTGTGTGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(283-419)

RecG wedge domain (RecG_wedge)

(15-164)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-666)

Helicase conserved C-terminal domain (Helicase_C)

(468-575)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.529

100

0.935

Multiple sequence alignment