Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   DV445_RS11270 Genome accession   NZ_CP031255
Coordinates   2230408..2232135 (+) Length   575 a.a.
NCBI ID   WP_114922413.1    Uniprot ID   -
Organism   Neisseria elongata strain M15910     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2225408..2237135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV445_RS13270 - 2225991..2226125 (-) 135 Protein_2186 IS5/IS1182 family transposase -
  DV445_RS11240 - 2226261..2227055 (-) 795 WP_114922410.1 thymidylate synthase -
  DV445_RS11245 - 2227145..2227483 (-) 339 WP_107854689.1 hypothetical protein -
  DV445_RS11250 - 2227515..2227913 (-) 399 WP_162817671.1 hypothetical protein -
  DV445_RS11255 - 2227975..2228535 (-) 561 WP_107854691.1 nitroreductase family protein -
  DV445_RS11260 dusA 2228551..2229582 (-) 1032 WP_114922412.1 tRNA dihydrouridine(20/20a) synthase DusA -
  DV445_RS11265 purN 2229590..2230216 (-) 627 WP_114922725.1 phosphoribosylglycinamide formyltransferase -
  DV445_RS11270 recD 2230408..2232135 (+) 1728 WP_114922413.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DV445_RS11275 - 2232243..2232740 (+) 498 WP_107854694.1 hypothetical protein -
  DV445_RS11280 - 2232923..2233366 (+) 444 WP_107854695.1 DNA polymerase III subunit chi -
  DV445_RS11285 - 2233371..2233622 (+) 252 WP_003771954.1 DUF1289 domain-containing protein -
  DV445_RS11290 - 2233705..2234163 (+) 459 WP_003771952.1 DUF6636 domain-containing protein -
  DV445_RS11295 - 2234315..2234644 (-) 330 WP_114922414.1 NGK_0946 family protein -
  DV445_RS11300 - 2234688..2234936 (-) 249 WP_049248545.1 hypothetical protein -
  DV445_RS11305 - 2235237..2235575 (-) 339 WP_107854696.1 hypothetical protein -
  DV445_RS11310 - 2235719..2236219 (-) 501 WP_114922415.1 DUF1841 family protein -
  DV445_RS11315 - 2236309..2236767 (-) 459 WP_114922416.1 NfeD family protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 62505.16 Da        Isoelectric Point: 6.4450

>NTDB_id=305140 DV445_RS11270 WP_114922413.1 2230408..2232135(+) (recD) [Neisseria elongata strain M15910]
MNDDEFQTAAADAAVELLSRLYPAATEVCSPFLRRLFAALEDGHSFIWLTDEEAGTLAQAAPLTDSKGLAPLVLRGRRLF
LGRFYRLERDLAGEIRRLAVPPAEIPETARAAELLAEWFAQPGSEGQQAAAALALLQNFILISGGPGTGKTTTVAKLLAL
LCQGRERLPRIALAAPTGKAAAHMARALHKALAGFSLSDGLKRHLSALEGQTVHRLLKLRPPQMQPQFDADNPLPLDILI
IDEASMLDLALMLNLLRAVPDGCRVILLGDENQLPSVGAGAVLASLAQTTILDGETAGRLKTLLPQRENPFQTASNPPAL
SANTARLTVSHRFGEHSGLGCLARAVCAGDEETAWAQFDRFPDQLSVRTASVEQLAADFCRQQADYWQAADHADIAAAFN
YQNHLAVLAARRDDAARFNLACRNHLQRHGRIPADAQWFAGQVIMIERNDYPLGLFNGDIGLILRDTDGGDGALAAYFPD
GGTYRKIPLSRLPAYETAFAMTVHKSQGSEYRDVWLLPPADAEGLNRALLYTAITRAREKFTFVGGRHAFAAACNRNETR
RSGLRDMLADETERI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=305140 DV445_RS11270 WP_114922413.1 2230408..2232135(+) (recD) [Neisseria elongata strain M15910]
ATGAATGACGACGAATTCCAAACCGCAGCCGCCGATGCCGCAGTCGAACTGCTCAGCCGCCTTTATCCTGCCGCCACCGA
GGTGTGCTCCCCGTTTTTACGCCGCCTTTTCGCCGCGCTGGAAGACGGCCACAGCTTTATTTGGCTGACCGACGAAGAAG
CCGGGACACTGGCGCAGGCCGCGCCGCTGACCGATTCGAAAGGCCTTGCCCCGCTGGTTTTGCGCGGGCGGCGGCTGTTC
CTCGGCCGCTTCTACCGGCTCGAACGCGACTTGGCCGGCGAAATCCGCCGCCTGGCCGTCCCGCCGGCCGAAATCCCCGA
AACCGCCCGCGCCGCAGAGTTGCTGGCGGAATGGTTTGCCCAACCCGGCAGCGAAGGCCAGCAGGCAGCCGCCGCGCTGG
CCCTGCTGCAAAACTTCATCTTAATTTCCGGCGGCCCCGGTACGGGCAAAACCACCACCGTCGCCAAACTGCTCGCCCTG
CTCTGCCAAGGCCGCGAACGCCTGCCGCGCATCGCGCTGGCCGCGCCGACGGGCAAAGCGGCGGCACACATGGCGCGCGC
CCTGCACAAAGCCCTGGCCGGCTTTTCCCTTTCAGACGGCCTCAAGCGGCATCTCTCGGCACTCGAAGGCCAAACCGTCC
ACCGCCTGTTGAAACTGCGCCCGCCGCAAATGCAGCCGCAGTTTGATGCCGACAACCCGCTGCCGCTCGACATCCTGATT
ATCGACGAAGCCTCGATGCTCGACCTCGCCCTGATGCTCAACCTCCTGCGCGCCGTGCCCGACGGCTGCCGCGTCATCCT
GTTGGGCGACGAAAACCAGCTCCCTTCCGTCGGCGCGGGCGCGGTATTGGCCTCTTTGGCACAAACCACCATCTTGGACG
GCGAAACGGCAGGCCGTCTGAAAACCCTGCTGCCGCAACGCGAAAACCCTTTTCAGACGGCCTCAAACCCGCCCGCGCTT
TCGGCCAACACCGCCCGCCTGACCGTCAGCCACCGTTTCGGCGAACACAGCGGGCTGGGCTGTCTGGCGCGCGCGGTGTG
CGCCGGAGACGAGGAAACCGCTTGGGCGCAGTTTGACCGTTTCCCCGACCAACTGTCCGTCCGCACGGCATCCGTCGAAC
AACTGGCCGCCGACTTCTGCCGTCAGCAGGCAGACTACTGGCAGGCCGCCGACCATGCCGACATCGCGGCCGCCTTCAAC
TACCAAAACCATCTGGCCGTACTGGCGGCAAGGCGCGACGATGCCGCCCGCTTCAACCTCGCCTGCCGCAACCACCTGCA
ACGGCACGGGCGCATACCGGCGGATGCACAATGGTTTGCCGGACAAGTCATCATGATAGAACGCAACGACTACCCGCTCG
GCCTCTTCAACGGCGACATCGGCCTGATCCTGCGCGATACCGATGGCGGCGACGGTGCGCTGGCGGCCTATTTCCCCGAC
GGCGGCACATACCGCAAAATCCCCCTCAGCCGCCTGCCCGCCTACGAAACCGCCTTCGCCATGACCGTGCACAAAAGCCA
AGGCTCCGAATACCGCGACGTTTGGCTGCTGCCGCCCGCCGATGCCGAAGGCCTCAACCGCGCCCTGCTCTACACCGCCA
TCACCCGCGCCCGCGAAAAATTTACCTTTGTCGGCGGCAGGCATGCCTTTGCCGCCGCCTGCAACCGCAACGAAACCCGC
CGCAGCGGCCTGCGCGACATGCTGGCGGATGAAACGGAACGGATATAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(498-541)

AAA domain (AAA_30)

(124-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

56.672

100

0.569

Multiple sequence alignment