Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DV445_RS08440 Genome accession   NZ_CP031255
Coordinates   1669686..1671071 (-) Length   461 a.a.
NCBI ID   WP_107970905.1    Uniprot ID   -
Organism   Neisseria elongata strain M15910     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1664686..1676071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV445_RS08425 - 1665307..1666374 (+) 1068 WP_162817651.1 pseudouridine synthase -
  DV445_RS08430 - 1666448..1667365 (+) 918 WP_114922152.1 WG repeat-containing protein -
  DV445_RS08435 - 1667444..1669540 (+) 2097 WP_114922153.1 hypothetical protein -
  DV445_RS08440 radA 1669686..1671071 (-) 1386 WP_107970905.1 DNA repair protein RadA Machinery gene
  DV445_RS08445 - 1671152..1671706 (-) 555 WP_114922154.1 hypothetical protein -
  DV445_RS08450 - 1671827..1672549 (-) 723 WP_003771648.1 SDR family oxidoreductase -
  DV445_RS08455 - 1672641..1673780 (-) 1140 WP_114922155.1 polyamine ABC transporter substrate-binding protein -
  DV445_RS08460 - 1674100..1674621 (+) 522 WP_003771657.1 RNA pyrophosphohydrolase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 49641.13 Da        Isoelectric Point: 6.8217

>NTDB_id=305136 DV445_RS08440 WP_107970905.1 1669686..1671071(-) (radA) [Neisseria elongata strain M15910]
MAKAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNEKEFPNLKIFGVSSLQEAIEICRDAENSA

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=305136 DV445_RS08440 WP_107970905.1 1669686..1671071(-) (radA) [Neisseria elongata strain M15910]
ATGGCAAAAGCCCCCAAAACCATCTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGTAAATGCCCGCA
TTGCGGCGAATGGAACACGCTTCAGGAAAGCCTGGCCGCGCCCGAACCGAAAAATGCCCGCTTCCAATCTTGGGCGGCAG
ACACCTCGACCGTCCAATCCCTCTCCGCCGTGACCGCCACCGAAGTGCCGCGCAATCCGACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTAGACGGCGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGTT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAGGAATCCGCCCAACAAGTCGCCC
TGCGCGCGCAGCGTTTGGAACTGCCCACCGAAGGCGTGAATCTGCTTGCAGAAATCCGTATGGAAGCCATTCAAGCGGCG
TTGAAACAGCATCAGCCCGAAGTCGTCGTCATTGACTCCATTCAAACCATGTATTCCGACCAAATCACTTCTGCCCCCGG
CTCCGTATCGCAGGTACGCGAATGCGCCGCCCAACTGACGCGCATGGCGAAACAAATGGGCATTGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTACTGGAACACATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAGCATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTGTTCGCCAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGACACCCCGGGTTCGT
GCGTTTTGGTCACGCAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGATGCACACGGCTTCACC
CCCAAACGCCTCACCGTCGGCCTCGAACAAAACCGCCTCGCCATGCTGCTCGCCGTCCTCAACCGACACGGCGGCATCGC
CTGCTTCGACCAAGACGTGTTCCTCAACGCCGTCGGCGGCGTCAAAATCGGCGAACCCGCCGCCGACCTCGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGCCCGCTGCCTGAAAAAATGGTCGCCTTCGGCGAAATCGGCCTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGACAGGAGCGACTTAAAGAAGCGGAAAAACTCGGCTTCAAACGTGCCATCGTCCCCAAAGC
CAATATGCCGCGCAACGAAAAAGAGTTCCCAAATCTAAAAATCTTCGGCGTTTCCAGCCTTCAGGAAGCCATCGAAATCT
GCCGCGATGCGGAAAACTCGGCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

98.698

0.495
  radA Streptococcus mitis SK321

47.368

98.915

0.469
  radA Streptococcus pneumoniae D39

47.046

99.132

0.466
  radA Streptococcus pneumoniae TIGR4

47.046

99.132

0.466
  radA Streptococcus pneumoniae R6

47.046

99.132

0.466
  radA Streptococcus pneumoniae Rx1

47.046

99.132

0.466
  radA Streptococcus mitis NCTC 12261

47.149

98.915

0.466

Multiple sequence alignment