Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VCD_RS08315 Genome accession   NC_012668
Coordinates   1710910..1711386 (-) Length   158 a.a.
NCBI ID   WP_000148675.1    Uniprot ID   Q9KR57
Organism   Vibrio cholerae MJ-1236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1705910..1716386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCD_RS08280 (VCD_002577) - 1706175..1706753 (+) 579 WP_000059473.1 hypothetical protein -
  VCD_RS08285 (VCD_002578) - 1706814..1707185 (+) 372 WP_000401420.1 hypothetical protein -
  VCD_RS08290 (VCD_002579) - 1707234..1707593 (+) 360 WP_000290080.1 phage tail assembly protein -
  VCD_RS08295 (VCD_002580) - 1707809..1708768 (+) 960 WP_001909624.1 tape measure protein -
  VCD_RS08305 (VCD_002582) - 1708811..1709988 (+) 1178 WP_086010879.1 IS3-like element ISVch4 family transposase -
  VCD_RS08310 (VCD_002583) - 1709985..1710680 (+) 696 WP_000213836.1 hypothetical protein -
  VCD_RS21455 (VCD_002584) - 1710782..1710913 (-) 132 Protein_1543 DUF2787 domain-containing protein -
  VCD_RS08315 (VCD_002585) radC 1710910..1711386 (-) 477 WP_000148675.1 RadC family protein Machinery gene
  VCD_RS08320 (VCD_002586) - 1711530..1711706 (+) 177 WP_001211490.1 AlpA family transcriptional regulator -
  VCD_RS08325 (VCD_002587) - 1711853..1714198 (-) 2346 WP_001211290.1 sialidase family protein -
  VCD_RS08330 (VCD_002588) nagA 1714622..1715758 (-) 1137 WP_001185226.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18274.71 Da        Isoelectric Point: 6.9191

>NTDB_id=30513 VCD_RS08315 WP_000148675.1 1710910..1711386(-) (radC) [Vibrio cholerae MJ-1236]
MTHFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDNQHRLIEFKELFRG
TVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=30513 VCD_RS08315 WP_000148675.1 1710910..1711386(-) (radC) [Vibrio cholerae MJ-1236]
ATGACTCATTTCCCTCGCCACCGCTATCTACTCTCGCAACGAGCTTATGAGCATCGAGTACTGGAAGAAGCAGCAGAGAT
CCTTGAACAGCGTTATGTGCGCGGTGAAACCTTTGCACGTACGGAAAACACCACGGAATACTTACGCTGTAAACTTGCTG
GATATGAGCACGAAATCTTTGCCGTACTGTTTTTGGATAACCAGCATCGGCTAATTGAATTTAAGGAGCTATTTCGCGGT
ACGGTCGATGCCGCCAGTGTCTACCCAAGAGAGGTATTAAAGGAGGCACTAAACGTTAACGCAGCAGCGGTGATCTTTGC
CCATAACCACCCCTCTGGCGATCCTGAGCCTTCACAAGCCGATAGGCGTATTACTCAGCGCTTAAAAGACGCCTTATCAC
TGGTAGATATTCGTGTGCTAGACCATGTGGTCGTTGGCAAAAGCAGTGTGTCATTTGCAGAAAGGGGCTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(41-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.286

88.608

0.437

Multiple sequence alignment