Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   VCD_RS08035 Genome accession   NC_012668
Coordinates   1660937..1661551 (+) Length   204 a.a.
NCBI ID   WP_000580359.1    Uniprot ID   Q9KR01
Organism   Vibrio cholerae MJ-1236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1655937..1666551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCD_RS08010 (VCD_002525) - 1656121..1657335 (-) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -
  VCD_RS08015 (VCD_002526) lpxH 1657431..1658171 (-) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  VCD_RS08020 (VCD_002527) - 1658212..1658706 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  VCD_RS08025 (VCD_002528) cysS 1658852..1660231 (+) 1380 WP_000913180.1 cysteine--tRNA ligase -
  VCD_RS08030 (VCD_002529) ruvC 1660319..1660840 (+) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  VCD_RS08035 (VCD_002530) ruvA 1660937..1661551 (+) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  VCD_RS08040 (VCD_002531) ruvB 1661607..1662611 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  VCD_RS08045 (VCD_002532) cydA 1663070..1664656 (+) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  VCD_RS08050 (VCD_002533) cydB 1664674..1665810 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  VCD_RS08055 (VCD_002534) cydX 1665823..1665930 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  VCD_RS08060 (VCD_002535) ybgE 1665923..1666240 (+) 318 WP_001286617.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22008.70 Da        Isoelectric Point: 5.0954

>NTDB_id=30511 VCD_RS08035 WP_000580359.1 1660937..1661551(+) (ruvA) [Vibrio cholerae MJ-1236]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=30511 VCD_RS08035 WP_000580359.1 1660937..1661551(+) (ruvA) [Vibrio cholerae MJ-1236]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGACCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATTCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment