Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EXA09_RS23250 Genome accession   NZ_CP035812
Coordinates   4767582..4768187 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain B7A     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4762582..4773187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA09_RS23230 aes 4762619..4763578 (+) 960 WP_000801846.1 acetyl esterase -
  EXA09_RS23235 hemH 4763575..4764537 (-) 963 WP_001250088.1 ferrochelatase -
  EXA09_RS23240 adk 4764773..4765417 (-) 645 WP_001716241.1 adenylate kinase -
  EXA09_RS23245 htpG 4765598..4767472 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  EXA09_RS23250 recR 4767582..4768187 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EXA09_RS23255 ybaB 4768187..4768516 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EXA09_RS23260 dnaX 4768569..4770500 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  EXA09_RS23265 apt 4770629..4771180 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EXA09_RS23270 ybaN 4771333..4771710 (-) 378 WP_001188905.1 DUF454 family protein -
  EXA09_RS23275 priC 4771780..4772307 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  EXA09_RS23280 rsmS 4772321..4772482 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EXA09_RS26270 - 4772535..4772633 (-) 99 Protein_4575 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=305103 EXA09_RS23250 WP_001195025.1 4767582..4768187(-) (recR) [Escherichia coli strain B7A]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=305103 EXA09_RS23250 WP_001195025.1 4767582..4768187(-) (recR) [Escherichia coli strain B7A]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443