Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   DV401_RS02935 Genome accession   NZ_CP031254
Coordinates   588923..589219 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain M25588     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 583923..594219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV401_RS09605 - 584841..584930 (-) 90 Protein_553 ABC transporter -
  DV401_RS02925 - 585303..588301 (+) 2999 Protein_554 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  DV401_RS02930 - 588571..588930 (+) 360 WP_005694481.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DV401_RS02935 HI0659 588923..589219 (+) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  DV401_RS02940 - 589380..591296 (+) 1917 WP_114877247.1 ABC transporter ATP-binding protein -
  DV401_RS02945 - 591306..591842 (+) 537 WP_103708099.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  DV401_RS02950 - 591858..592409 (+) 552 WP_103708098.1 Sua5/YciO/YrdC/YwlC family protein -
  DV401_RS02955 aroE 592413..593219 (+) 807 WP_103708097.1 shikimate dehydrogenase -
  DV401_RS02960 - 593433..593996 (+) 564 WP_103708096.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=305089 DV401_RS02935 WP_005650837.1 588923..589219(+) (HI0659) [Haemophilus influenzae strain M25588]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=305089 DV401_RS02935 WP_005650837.1 588923..589219(+) (HI0659) [Haemophilus influenzae strain M25588]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTTCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1

Multiple sequence alignment