Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EXA09_RS10875 Genome accession   NZ_CP035812
Coordinates   2293288..2293803 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain B7A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2288288..2298803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA09_RS10830 csrA 2288875..2289060 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  EXA09_RS10860 yqaB 2290518..2291084 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EXA09_RS10865 yqaA 2291081..2291509 (+) 429 WP_001287457.1 YqaA family protein -
  EXA09_RS10870 gshA 2291582..2293138 (+) 1557 WP_001297214.1 glutamate--cysteine ligase -
  EXA09_RS10875 luxS 2293288..2293803 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  EXA09_RS10880 emrB 2293867..2295405 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EXA09_RS10885 emrA 2295422..2296594 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EXA09_RS10890 emrR 2296721..2297251 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EXA09_RS10895 ygaH 2297342..2297677 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  EXA09_RS10900 ygaZ 2297667..2298404 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=305075 EXA09_RS10875 WP_001130210.1 2293288..2293803(+) (luxS) [Escherichia coli strain B7A]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=305075 EXA09_RS10875 WP_001130210.1 2293288..2293803(+) (luxS) [Escherichia coli strain B7A]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737