Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA09_RS05765 Genome accession   NZ_CP035812
Coordinates   1244333..1245001 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain B7A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1239333..1250001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA09_RS05735 yicC 1239352..1240215 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  EXA09_RS05740 rph 1240342..1241058 (+) 717 WP_001247093.1 ribonuclease PH -
  EXA09_RS05745 pyrE 1241124..1241765 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  EXA09_RS05750 slmA 1241802..1242398 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  EXA09_RS05755 dut 1242505..1242963 (-) 459 WP_000976070.1 dUTP diphosphatase -
  EXA09_RS05760 coaBC 1242941..1244161 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EXA09_RS05765 radC 1244333..1245001 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  EXA09_RS05770 rpmB 1245218..1245454 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  EXA09_RS05775 rpmG 1245475..1245642 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  EXA09_RS05780 mutM 1245740..1246549 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EXA09_RS05785 coaD 1246588..1247067 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  EXA09_RS05790 waaA 1247075..1248352 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EXA09_RS05795 rfaQ 1248766..1249824 (+) 1059 WP_000360413.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=305056 EXA09_RS05765 WP_001297375.1 1244333..1245001(+) (radC) [Escherichia coli strain B7A]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=305056 EXA09_RS05765 WP_001297375.1 1244333..1245001(+) (radC) [Escherichia coli strain B7A]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496