Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   DV311_RS02310 Genome accession   NZ_CP031253
Coordinates   406833..407909 (-) Length   358 a.a.
NCBI ID   WP_003713811.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 401833..412909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS12370 - 402032..402172 (+) 141 WP_162817098.1 hypothetical protein -
  DV311_RS12375 - 402660..402908 (+) 249 WP_162817099.1 hypothetical protein -
  DV311_RS02285 - 403116..403742 (-) 627 WP_114935084.1 phosphoribosylanthranilate isomerase -
  DV311_RS02290 greB 403801..404292 (-) 492 WP_114935085.1 transcription elongation factor GreB -
  DV311_RS02295 purF 404392..405936 (-) 1545 WP_114935086.1 amidophosphoribosyltransferase -
  DV311_RS02300 - 406045..406272 (+) 228 WP_003713815.1 hypothetical protein -
  DV311_RS02305 - 406343..406840 (-) 498 WP_003713813.1 CvpA family protein -
  DV311_RS02310 tpc 406833..407909 (-) 1077 WP_003713811.1 cell division protein FtsN Machinery gene
  DV311_RS02315 folC 407922..409196 (-) 1275 WP_003713809.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  DV311_RS02320 - 409228..409674 (-) 447 WP_003713808.1 protein YgfX -
  DV311_RS02325 - 409679..410038 (-) 360 WP_002214147.1 hypothetical protein -
  DV311_RS02330 - 410111..410839 (-) 729 WP_003713803.1 amino acid ABC transporter ATP-binding protein -
  DV311_RS02335 - 410881..411336 (-) 456 WP_003713800.1 hypothetical protein -
  DV311_RS02340 - 411447..412016 (-) 570 WP_003713797.1 GTP pyrophosphokinase -
  DV311_RS02345 rsmA 412032..412811 (-) 780 WP_003713795.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 37618.85 Da        Isoelectric Point: 9.8010

>NTDB_id=305044 DV311_RS02310 WP_003713811.1 406833..407909(-) (tpc) [Neisseria lactamica strain M17106]
MSENKQNEVLTGYEQLKRRNRRRLVTASCLVAASCILLAAALSSDPADSNPAPQAGETGATENQTANAAQAPALKSAAGN
GETAAGKPQDAAGGGKPADDGGISEPEDIGAPLVIINNRLDDSNIKGLEASAKPQPQEAAEKPQPEETAATAQAEAKQGA
AEKAQAPADNKDTAEKPKPAAEPKPQKTERAAEAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDKPVKEPKKSDKAES
KKPAEKDSSDGKKHETAQKTDKADKAKTAGQGKTAEKEKSDKTGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMT
DNGKVYRVKSSNYKNARDAERDLNKLRVHGIAGQVTNE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=305044 DV311_RS02310 WP_003713811.1 406833..407909(-) (tpc) [Neisseria lactamica strain M17106]
ATGTCCGAAAACAAACAAAACGAAGTCCTGACCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGCTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCGGCCGCCCTCAGCTCCGATCCCGCCGACAGCAACCCTGCCCCGC
AGGCCGGCGAAACCGGCGCAACGGAAAACCAAACGGCAAACGCGGCACAAGCCCCGGCTTTGAAATCCGCCGCCGGAAAC
GGGGAAACCGCCGCCGGCAAACCGCAGGACGCGGCAGGCGGGGGCAAACCCGCCGACGACGGCGGAATCAGCGAACCCGA
AGACATCGGCGCACCGCTGGTCATCATCAACAACCGGCTCGACGACAGCAATATCAAAGGTTTGGAGGCATCCGCAAAAC
CGCAACCGCAAGAAGCCGCCGAAAAACCGCAACCGGAAGAAACCGCCGCAACCGCACAGGCGGAGGCAAAACAAGGCGCG
GCCGAAAAAGCGCAGGCACCGGCCGACAACAAAGATACGGCTGAAAAACCGAAACCTGCCGCCGAACCCAAACCGCAAAA
AACGGAACGCGCCGCCGAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGCCGAAAAAGTTGCCGACAAACCGAAAACTG
CCGCCGAAAAAACCAAACCGGATACGGCCAAATCCGACAAGCCGGTAAAAGAACCGAAAAAATCCGATAAGGCTGAAAGC
AAAAAACCGGCTGAAAAAGACAGTTCGGACGGCAAAAAACACGAAACGGCTCAAAAAACCGACAAGGCGGACAAAGCCAA
AACCGCCGGACAAGGAAAAACCGCCGAAAAAGAAAAATCCGACAAAACCGGCAAAAAAGCCGCCATTCAGGCAGGTTATG
CCGAAAAAGAACGTGCCTTGAGCCTCCAGCGCAAAATGAAGGCGGCGGGCATCGATTCGACCATTACCGAAATTATGACC
GACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTGCG
CGTGCACGGTATCGCCGGCCAGGTAACGAATGAATAG

Domains


Predicted by InterproScan.

(285-356)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

81.994

100

0.827


Multiple sequence alignment