Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   DV311_RS01310 Genome accession   NZ_CP031253
Coordinates   227148..229190 (+) Length   680 a.a.
NCBI ID   WP_114935006.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 222148..234190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS01275 - 222608..222982 (+) 375 WP_003712559.1 nuclear transport factor 2 family protein -
  DV311_RS01280 - 223051..223344 (+) 294 WP_374057477.1 MoaF-related domain-containing protein -
  DV311_RS01285 - 223390..223767 (+) 378 WP_114935004.1 hypothetical protein -
  DV311_RS01290 - 223812..224492 (-) 681 Protein_211 IS5 family transposase -
  DV311_RS01295 rng 224634..226127 (-) 1494 WP_114935005.1 ribonuclease G -
  DV311_RS01300 grxC 226341..226598 (+) 258 WP_002214462.1 glutaredoxin 3 -
  DV311_RS01305 secB 226619..227062 (+) 444 WP_002226664.1 protein-export chaperone SecB -
  DV311_RS01310 recG 227148..229190 (+) 2043 WP_114935006.1 ATP-dependent DNA helicase RecG Machinery gene
  DV311_RS01315 - 229268..229657 (-) 390 WP_114935007.1 hypothetical protein -
  DV311_RS01320 argC 229700..230743 (-) 1044 WP_114935008.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  DV311_RS01325 - 230817..231266 (-) 450 WP_114935009.1 DUF6636 domain-containing protein -
  DV311_RS01330 - 231271..232491 (-) 1221 WP_114935010.1 YihY family inner membrane protein -
  DV311_RS01340 queC 232727..233383 (+) 657 WP_003712548.1 7-cyano-7-deazaguanine synthase QueC -
  DV311_RS01345 - 233518..234039 (+) 522 WP_114935011.1 DUF1543 domain-containing protein -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75088.22 Da        Isoelectric Point: 8.3857

>NTDB_id=305042 DV311_RS01310 WP_114935006.1 227148..229190(+) (recG) [Neisseria lactamica strain M17106]
MMSPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQI
ADGSGSVLFLRFIHFYAGHQKQMAVGKRIRAVGEIKHGFYGDEMIHPKIRDAESSGLAESLTPIYPTVNGLNQPTLRRII
QTALDVTPLHDTLPDALLCRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGSA
AALRGNGVLTQALRRALPFALTDAQENVLAEVQTDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEI
LAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRL
ALKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDKLPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLI
EESETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMTRFSSGELNVLVATTVIEVGVDVPNAALMVIEHAERM
GLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEE
DLHLLEQARETAPMLIEQNPEIVEAHLARWLSGREGYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=305042 DV311_RS01310 WP_114935006.1 227148..229190(+) (recG) [Neisseria lactamica strain M17106]
ATGATGTCGCCCGAAACCCAGAAACAGCTCAAAATCACCGATGTTTCCGCCAAGAAGCTCGACAAACTCAACCTCCATAC
CGCGTGGGATTTGGTTTTGCATCTGCCGCTGCGTTACGAGGACGAGACGCACATTATGCCGATTAAGGACGCGCCGATCG
GCGTGCCGTGTCAGGTTGAGGGTGAGGTTATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGCTGATTGTCCAAATT
GCCGACGGCTCAGGCAGCGTCCTTTTTCTGCGCTTCATCCACTTTTACGCCGGCCATCAGAAACAGATGGCGGTCGGTAA
ACGCATCCGCGCCGTGGGAGAAATCAAACACGGGTTTTACGGCGATGAGATGATTCATCCCAAAATCCGTGATGCCGAGA
GCAGTGGTTTGGCGGAAAGCCTCACGCCGATTTATCCGACCGTAAACGGTTTGAACCAGCCCACTTTGCGCCGCATCATT
CAGACGGCGTTGGACGTTACGCCGCTGCACGACACGCTGCCCGATGCCCTGCTGTGCCGTCTGAAGCTGCCGCACCTTGC
CGAAAGCCTGCGCCTTTTGCATTCGCCGCCGCCGAGTTTCACGATTCATCAGCTTTCAGACGGCACGCTGCCGGCGTGGC
AGCGGCTCAAATTCGACGAACTTTTGGCGCAACAGCTTTCTATGCGGCTGGCGCGGCAGAAGCGTATCGGCGGCTCGGCG
GCGGCATTGCGCGGCAATGGCGTATTGACCCAAGCCCTGCGCCGCGCCCTGCCGTTTGCCCTGACCGATGCACAAGAAAA
CGTGTTGGCGGAAGTTCAAACCGATATGGCGCAAACGCACCCGATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCA
AAACCATCGTCGCCGCCTTGTCCGCGCTGACCGCCATCGAATCAGGCGCACAGGTTGCCGTGATGGCCCCCACTGAAATC
CTTGCCGAACAACATTTCATCAAGTTCAAACAATGGCTTGAGCCTTTGGGTATTGAGGTTGTCCGCCTTTTTGGCAGTTT
GCGTAAAAAAGCTAAAGACGAAGCCAAAGCCAAACTCGCCGACGGCAGCGTCAAAATCGCCGTCGGCACGCACGCCCTGT
TTTCAGACGGCGTGGCGTTTCACAATTTGGGCCTGACCATCGTGGACGAACAGCACCGTTTCGGCGTTGCCCAACGCCTC
GCCCTCAAAAACAAAGGGCGCGAAGTCCACCAGCTGATGATGTCCGCCACGCCCATCCCGCGCACGCTTGCGATGAGTTT
TTTCGCTGATTTGGACGTGTCCGTCATCGACAAACTGCCGCCCGGGCGCACCCCGATTAAAACGCGCCTCGTCAACAACG
TCCGCCGCGCCGAAGTCGAAGGCTTCGTCCTCAATACTTGCCGCAAAGGGCGGCAGGCGTATTGGGTTTGTCCGCTGATT
GAAGAAAGCGAAACCCTGCAATTGCAAACCGCCGCCGAAACCCTCGCCCGGCTTCAGACGGCATTGCCCGAGCTGAATAT
CGGACTGGTACACGGGCGTATGAAGGCCGCCGAAAAAGCCGAAGTGATGACGCGGTTTTCTTCGGGGGAGCTGAATGTCT
TGGTCGCCACCACCGTTATCGAAGTCGGCGTAGATGTGCCCAATGCCGCCCTGATGGTCATCGAACACGCCGAGCGCATG
GGCTTGGCGCAGCTACACCAATTACGCGGTCGGGTCGGGCGCGGCGCGGCAGAAAGCGTGTGCGTCCTCTTGTTTGCCGA
ACCCTTGGGCGAACTCGCCAAAGCGCGGTTGAAAGTGATTTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACC
TCAATATCCGCGGTCCCGGCGAATTTCTCGGCGCGCGTCAAAGCGGCGTGCCTATGCTGCGCTTCGCCAAGCTTGAAGAA
GACCTGCACCTTTTGGAACAGGCGCGTGAAACCGCCCCGATGCTGATTGAACAAAACCCCGAAATCGTCGAAGCGCATTT
GGCAAGATGGCTTTCCGGCAGGGAAGGGTATTTGGGCGTGTGA

Domains

Predicted by InterproScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-666)

DEAD/DEAH box helicase (DEAD)

(283-421)

Helicase conserved C-terminal domain (Helicase_C)

(468-575)

RecG wedge domain (RecG_wedge)

(15-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

96.765

100

0.968

Multiple sequence alignment