Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA09_RS02145 Genome accession   NZ_CP035812
Coordinates   461599..462075 (-) Length   158 a.a.
NCBI ID   WP_001297237.1    Uniprot ID   -
Organism   Escherichia coli strain B7A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 456599..467075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA09_RS25945 - 457145..457288 (+) 144 Protein_414 restriction endonuclease -
  EXA09_RS26285 - 457952..458080 (-) 129 Protein_415 transcriptional regulator -
  EXA09_RS02110 - 458056..458205 (-) 150 Protein_416 restriction endonuclease subunit M -
  EXA09_RS02115 - 458290..458487 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  EXA09_RS25950 - 458499..458603 (-) 105 Protein_418 DUF5983 family protein -
  EXA09_RS02125 - 459937..460323 (-) 387 Protein_420 DUF5983 family protein -
  EXA09_RS02130 - 460320..460694 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  EXA09_RS02135 cbeA 460784..461152 (-) 369 WP_021542768.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA09_RS02140 yeeT 461315..461536 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  EXA09_RS02145 radC 461599..462075 (-) 477 WP_001297237.1 RadC family protein Machinery gene
  EXA09_RS02150 - 462091..462576 (-) 486 WP_000849588.1 antirestriction protein -
  EXA09_RS02155 - 462631..463449 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  EXA09_RS02160 - 463549..463782 (-) 234 WP_001119729.1 DUF905 family protein -
  EXA09_RS02165 - 463861..464316 (-) 456 WP_000581504.1 IrmA family protein -
  EXA09_RS02170 - 464392..466908 (-) 2517 WP_001297226.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17691.29 Da        Isoelectric Point: 7.2020

>NTDB_id=305034 EXA09_RS02145 WP_001297237.1 461599..462075(-) (radC) [Escherichia coli strain B7A]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLTHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305034 EXA09_RS02145 WP_001297237.1 461599..462075(-) (radC) [Escherichia coli strain B7A]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGACACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment