Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   DV446_RS10870 Genome accession   NZ_CP031252
Coordinates   2148079..2149806 (-) Length   575 a.a.
NCBI ID   WP_074897720.1    Uniprot ID   A0A378TYA8
Organism   Neisseria elongata strain M15911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2143079..2154806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS10825 - 2143445..2143903 (+) 459 WP_003771941.1 NfeD family protein -
  DV446_RS10830 - 2143993..2144493 (+) 501 WP_074897733.1 DUF1841 family protein -
  DV446_RS10835 - 2144638..2144976 (+) 339 WP_074897730.1 hypothetical protein -
  DV446_RS10840 - 2145278..2145526 (+) 249 WP_049248545.1 hypothetical protein -
  DV446_RS10845 - 2145569..2145898 (+) 330 WP_040665810.1 NGK_0946 family protein -
  DV446_RS10850 - 2146050..2146508 (-) 459 WP_074897726.1 DUF6636 domain-containing protein -
  DV446_RS10855 - 2146591..2146842 (-) 252 WP_003771954.1 DUF1289 domain-containing protein -
  DV446_RS10860 - 2146847..2147290 (-) 444 WP_074897724.1 DNA polymerase III subunit chi -
  DV446_RS10865 - 2147475..2147972 (-) 498 WP_074897722.1 hypothetical protein -
  DV446_RS10870 recD 2148079..2149806 (-) 1728 WP_074897720.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DV446_RS12210 - 2149799..2149966 (-) 168 WP_162817042.1 hypothetical protein -
  DV446_RS10875 purN 2149998..2150624 (+) 627 WP_074897796.1 phosphoribosylglycinamide formyltransferase -
  DV446_RS10880 dusA 2150632..2151663 (+) 1032 WP_074897718.1 tRNA dihydrouridine(20/20a) synthase DusA -
  DV446_RS10885 - 2151679..2152239 (+) 561 WP_074897715.1 nitroreductase family protein -
  DV446_RS10890 - 2152301..2152699 (+) 399 WP_143095771.1 hypothetical protein -
  DV446_RS10895 - 2152757..2153095 (+) 339 WP_074897709.1 hypothetical protein -
  DV446_RS10900 - 2153185..2153979 (+) 795 WP_074897706.1 thymidylate synthase -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 62375.07 Da        Isoelectric Point: 6.4443

>NTDB_id=305034 DV446_RS10870 WP_074897720.1 2148079..2149806(-) (recD) [Neisseria elongata strain M15911]
MNDDEFQTAAADAAVELLSRLYPAAAEVCAPFLRRLFAALEDGHSFIRLTDEEAGTLAQAAPLTDSKGLAPLVLRGRRLF
LGRFYRLERDLAGEIRRLAVPPVEIPETARAAELLAEWFAQAGSEGQQAAAALALLQNFILISGGPGTGKTTTVAKLLAL
LCQGRERLPRIALAAPTGKAAAHMARALHKALAGFSLSDGLKRHLSALEGQTVHRLLKLRPPQMQPQFDADNPLPLDILI
IDEASMLDLALMLNLLRAVPDGCRVILLGDENQLPSVGAGAVLASLAQTTILDSETAGRLKTLLPQRENPFQTASNPPAL
SANTARLTVSHRFGEHSGLGCLARAVCAGDEETAWAQFDRFPDQLSVRTASVEQLAADFCRQQADYWQAADHADIAAAFD
CQSHLAVLAARRDDAARFNLACRNHLQRHGRIPADAQWFAGQVIMIERNDYPLGLFNGDIGLILRDTDGGDGALAAYFPD
GGTYRKIPLSRLPAYETAFAMTVHKSQGSEYRDVWLLPPADAEGLNRALLYTAITRAREKFTFVGGRHAFAAACNRNETR
RSGLRDMLADETERI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=305034 DV446_RS10870 WP_074897720.1 2148079..2149806(-) (recD) [Neisseria elongata strain M15911]
ATGAATGACGACGAATTCCAAACCGCAGCCGCCGATGCCGCAGTCGAACTGCTCAGCCGCCTTTATCCTGCCGCCGCCGA
GGTGTGCGCCCCGTTTTTACGCCGCCTTTTCGCCGCGCTGGAAGACGGCCACAGCTTTATCCGGCTGACCGACGAAGAAG
CTGGAACACTGGCGCAGGCCGCCCCGCTGACCGATTCGAAAGGCCTTGCCCCGCTGGTTTTGCGCGGGCGGCGGCTGTTC
CTCGGCCGCTTCTACCGGCTCGAACGCGACTTGGCCGGCGAAATCCGCCGCCTGGCCGTCCCGCCGGTCGAAATCCCCGA
AACCGCCCGCGCCGCCGAGTTGCTGGCGGAATGGTTTGCCCAAGCCGGCAGCGAAGGCCAGCAGGCCGCCGCCGCGCTGG
CCCTGCTGCAAAACTTCATCTTAATTTCCGGCGGCCCCGGCACGGGCAAAACCACCACCGTCGCCAAACTGCTCGCCCTG
CTCTGCCAAGGCCGCGAACGCCTGCCGCGCATCGCGCTGGCCGCGCCGACGGGCAAAGCGGCGGCACACATGGCGCGCGC
CCTGCACAAAGCCCTGGCCGGCTTTTCCCTTTCAGACGGCCTCAAGCGGCACCTCTCGGCACTCGAAGGCCAAACCGTCC
ACCGCCTGTTGAAACTGCGCCCGCCGCAAATGCAGCCGCAATTTGATGCCGACAACCCGCTGCCGCTCGACATCCTGATT
ATCGACGAAGCCTCGATGCTCGACCTCGCCCTGATGCTCAACCTCCTGCGCGCCGTGCCCGACGGCTGCCGCGTCATCCT
GTTGGGCGACGAAAACCAGCTCCCTTCCGTCGGCGCGGGCGCGGTATTGGCCTCTTTGGCACAAACCACCATCTTGGACA
GCGAAACGGCAGGCCGTCTGAAAACCCTGCTGCCGCAACGCGAAAACCCTTTTCAGACGGCCTCCAACCCGCCCGCGCTT
TCGGCCAACACCGCCCGCCTGACCGTCAGCCACCGTTTCGGCGAACACAGCGGGCTGGGCTGTCTGGCGCGCGCGGTGTG
CGCCGGAGACGAGGAAACCGCTTGGGCGCAGTTTGACCGTTTCCCCGACCAACTGTCCGTCCGCACGGCATCCGTCGAAC
AACTGGCCGCCGACTTCTGCCGTCAGCAGGCAGACTACTGGCAGGCCGCCGACCATGCCGACATCGCGGCCGCCTTCGAC
TGCCAAAGCCATCTGGCCGTACTGGCGGCAAGGCGCGACGATGCCGCCCGCTTCAACCTCGCCTGCCGCAACCACCTGCA
ACGGCACGGGCGCATACCGGCGGATGCACAATGGTTTGCCGGACAAGTCATCATGATAGAACGCAACGACTACCCGCTCG
GCCTCTTCAACGGCGACATCGGCCTGATCCTGCGCGATACCGACGGCGGCGACGGCGCGCTGGCGGCCTATTTCCCCGAC
GGCGGCACATACCGAAAAATCCCCCTCAGCCGCCTGCCCGCCTACGAAACCGCCTTCGCCATGACCGTGCACAAAAGCCA
AGGCTCCGAATACCGCGACGTTTGGCTGCTGCCGCCCGCCGATGCCGAAGGCCTCAACCGCGCCCTGCTCTACACCGCCA
TCACCCGCGCCCGCGAAAAATTTACCTTTGTCGGCGGCAGGCATGCCTTTGCCGCCGCCTGCAACCGCAACGAAACCCGC
CGCAGCGGCCTGCGCGACATGCTGGCGGATGAAACGGAACGGATATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(124-315)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(498-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378TYA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

57.192

100

0.574

Multiple sequence alignment