Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   DV446_RS09740 Genome accession   NZ_CP031252
Coordinates   1914181..1916223 (-) Length   680 a.a.
NCBI ID   WP_114910536.1    Uniprot ID   -
Organism   Neisseria elongata strain M15911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1909181..1921223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS09695 - 1909267..1909956 (+) 690 WP_074895436.1 M48 family metallopeptidase -
  DV446_RS09725 pgsA 1910813..1911376 (-) 564 WP_003769911.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DV446_RS09730 hpnC 1911589..1912404 (+) 816 WP_074895434.1 squalene synthase HpnC -
  DV446_RS09735 - 1912479..1914011 (+) 1533 WP_305728884.1 phospholipase D family protein -
  DV446_RS09740 recG 1914181..1916223 (-) 2043 WP_114910536.1 ATP-dependent DNA helicase RecG Machinery gene
  DV446_RS12185 - 1916238..1916411 (+) 174 WP_162817037.1 hypothetical protein -
  DV446_RS09745 tldD 1916637..1918082 (+) 1446 WP_074895431.1 metalloprotease TldD -
  DV446_RS09750 - 1918170..1918772 (-) 603 WP_074895429.1 DUF4112 domain-containing protein -
  DV446_RS09755 - 1918965..1919396 (-) 432 WP_074895427.1 acyl-CoA thioesterase -
  DV446_RS09760 - 1919561..1920520 (-) 960 WP_074895425.1 L,D-transpeptidase -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75154.02 Da        Isoelectric Point: 7.0848

>NTDB_id=305032 DV446_RS09740 WP_114910536.1 1914181..1916223(-) (recG) [Neisseria elongata strain M15911]
MMTPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQI
ADGSGSVLFLRFIHFYASHQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDAESGGLAESLTPIYPTVNGLNQPTLRRII
QTALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTA
AALGGDGTLTQTLRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQAAVMAPTEI
LAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIAVGTHTLFSDDVEFQNLGLVIVDEQHRFGVAQRL
ALKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLI
EESETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERM
GLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEE
DLHLLEQAREIAPLLIEQNPEIVEAHLARWLASREGYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=305032 DV446_RS09740 WP_114910536.1 1914181..1916223(-) (recG) [Neisseria elongata strain M15911]
ATGATGACGCCCGAAACCCAGAAACAGCTCAAAATCACCGACGTTTCCGCCAAGAAGCTCGACAAACTCAACCTCCATAC
CGCGTGGGATTTAGTTTTGCACCTGCCGCTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGATGCGCCGATCG
GCGTGCCGTGTCAGGTTGAGGGCGAGGTCATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGTTGATTGTCCAAATC
GCCGACGGTTCCGGCAGCGTTCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCCATCAGAAACAGATGGCGGTCGGCAA
ACGCATCCGCGCCGTGGGCGAAATCAAACACGGGTTTCACGGCGACGAGATGATTCATCCCAAAATCCGCGATGCCGAGA
GCGGCGGTTTGGCGGAAAGCCTCACGCCGATTTATCCGACAGTAAACGGTTTGAACCAGCCCACTTTGCGCCGCATCATT
CAGACGGCGTTGGACGTTACGCCGCTGCACGACACGCTGCCCGATGCCTTATTGGGTCGTCTGAAACTGCCGCACCTTGC
TGAAAGCCTGCGTCTTTTGCATTCGCCGCCGCCGAGCTTCACCATCCACCAGCTTTCCGATGGCGCGCTGCCCGCATGGC
AGCGGCTTAAATTCGACGAACTTTTGGCGCAACAGCTTTCCATGCGGCTGGCACGACAGAAGCGTGTCAGCGGTACGGCG
GCGGCATTGGGCGGCGACGGCACATTGACCCAAACTCTGCGCCACGCCTTGCCGTTTGCCCTGACTGATGCGCAAGAAAG
AGTCGTGTCCGAAATCCGCCGCGACATGGCGCAAACCCACCCCATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCA
AAACCATCGTCGCCGCCTTGTCCGCCTTAACCGCCATCGAATCCGGCGCGCAGGCGGCCGTGATGGCGCCGACTGAAATC
CTTGCCGAACAGCATTTCATCAAGTTCAAACAATGGCTCGAGCCGTTAGGACTCGAAGTCGTCTGGCTCTCCGGCAGCCA
GCGCAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTCGCCGACGGCACCGTCAAAATCGCCGTCGGCACGCACACCCTGT
TTTCAGACGACGTCGAGTTTCAAAATCTGGGCTTGGTGATTGTGGACGAACAACACCGCTTCGGCGTCGCCCAACGCCTC
GCCCTCAAAAACAAAGGGCGCGACGTCCACCAGCTGATGATGTCCGCCACCCCTATCCCGCGCACGCTCGCCATGAGTTT
CTTCGCCGACTTGGACGTGTCCGTCATCGACGAATTGCCTCCCGGGCGCACCCCGATTAAAACCCGCCTCGTCAACAACG
TCCGCCGCGCCGAAGTCGAAGGCTTCGTCCTCAACATCTGCCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATT
GAAGAAAGCGAAACCCTGCAACTGCAAACCGCCACCGAAACCCTAGAGCAGCTTCAGGCGGCATTGCCCGAACTCAACAT
CGGCTTGGTGCACGGGCGCATGAAGGCCGCTGAAAAAGCCGAAGTCATGGCTCAGTTTGCCGCAGGCCGTCTGAACGTCT
TGGTCGCCACCACCGTCATCGAAGTCGGCGTAGATGTGCCCAATGCCGCCCTGATGGTGATCGAACACGCCGAGCGCATG
GGCTTGGCGCAGCTTCATCAATTACGCGGACGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGCGTCCTCCTGTTTGCAGA
ACCCTTGAGCGAACTTGCCAAGGCGCGGCTGAAAGTCATCTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACC
TCAACATCCGCGGCCCCGGCGAATTTCTCGGCGCGCGCCAAAGCGGCGTCCCCATGCTGCGCTTCGCCAACCTCGAAGAA
GACCTGCACCTCTTGGAACAAGCGCGCGAAATTGCCCCCTTGCTGATTGAACAAAACCCCGAAATCGTCGAAGCGCATCT
GGCAAGGTGGCTTGCCAGCAGGGAAGGCTATTTGGGTGTGTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(468-575)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-666)

DEAD/DEAH box helicase (DEAD)

(262-419)

RecG wedge domain (RecG_wedge)

(15-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.529

100

0.935

Multiple sequence alignment