Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DV114_RS10110 Genome accession   NZ_CP031251
Coordinates   2092779..2094311 (+) Length   510 a.a.
NCBI ID   WP_167382863.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2087779..2099311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS10090 - 2087959..2088528 (+) 570 WP_101755793.1 L-threonylcarbamoyladenylate synthase -
  DV114_RS10095 - 2088912..2089352 (-) 441 WP_101755668.1 surface-adhesin E family protein -
  DV114_RS10100 purB 2089563..2090933 (+) 1371 WP_101755669.1 adenylosuccinate lyase -
  DV114_RS10105 msrAB 2091065..2092633 (-) 1569 WP_101755670.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  DV114_RS10110 pilA 2092779..2094311 (+) 1533 WP_167382863.1 signal recognition particle-docking protein FtsY Machinery gene
  DV114_RS10115 - 2094468..2095364 (-) 897 WP_101755671.1 polyprenyl synthetase family protein -
  DV114_RS10120 - 2095348..2095575 (-) 228 WP_003681131.1 exodeoxyribonuclease VII small subunit -
  DV114_RS10125 - 2095711..2097567 (-) 1857 WP_101755672.1 RNB domain-containing ribonuclease -
  DV114_RS10130 - 2097676..2098596 (-) 921 WP_101755673.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54682.65 Da        Isoelectric Point: 4.1889

>NTDB_id=305003 DV114_RS10110 WP_167382863.1 2092779..2094311(+) (pilA) [Neisseria subflava strain M18660]
MFSFFRRKKKQETPAPEEAQVQETAAKVESEVAQVVENIKEDAESLAESVKGHIESVVESAVETVSETVEQVREALTETP
SETIEKVEEHVEVAKEAAVETVSEAVDQVQEAVAEMPSEVAEVAEEAAEQAEAAKEAAVETVSEAVEQVQETVAEMPSEV
AEVAEEAAEQAETVKEEAVEAVSEAVEQVQEAIAETPAEAPAQAEEPKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQID
EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGING
AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTA
GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDR
PVPVRYIGVGEGIDDLRPFNAKAFVDALLD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=305003 DV114_RS10110 WP_167382863.1 2092779..2094311(+) (pilA) [Neisseria subflava strain M18660]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACTCCGGCTCCTGAGGAGGCTCAAGTTCAGGAAACCGCAGCAAA
AGTAGAATCTGAAGTTGCTCAAGTAGTTGAAAATATTAAAGAAGATGCCGAATCTTTAGCAGAAAGCGTCAAAGGGCATA
TTGAATCAGTTGTCGAATCGGCTGTTGAAACTGTCAGCGAAACCGTCGAGCAGGTTCGGGAAGCTTTGACCGAAACGCCG
TCTGAAACAATCGAAAAAGTAGAAGAACACGTTGAAGTGGCAAAAGAAGCGGCCGTTGAAACCGTCAGCGAGGCTGTTGA
TCAGGTTCAAGAAGCCGTTGCCGAGATGCCGTCTGAAGTGGCCGAGGTTGCTGAGGAAGCAGCAGAACAGGCTGAGGCGG
CAAAAGAAGCAGCAGTTGAAACCGTCAGCGAGGCTGTTGAGCAGGTTCAAGAAACCGTTGCCGAGATGCCGTCTGAAGTG
GCCGAGGTTGCTGAGGAAGCAGCAGAACAGGCCGAAACGGTCAAAGAAGAAGCTGTTGAAGCAGTTAGCGAAGCTGTCGA
GCAAGTTCAAGAAGCCATTGCGGAAACACCGGCTGAAGCCCCTGCTCAGGCAGAAGAACCCAAGCTCAGTTGGGCTGCGC
GTTTGAAACAAGGCTTGACCAAATCACGTGACAAAATGGCAAAATCGTTGGCCGGCGTGTTTGGCGGCGGGCAAATCGAC
GAGGATTTGTACGAAGAGCTGGAAACTGTTCTGATTACCAGCGATATGGGCATGGAAGCCACCGAATACTTGATGAAAGA
CGTGCGCGACCGTGTCAGCCTCAAAGGCCTCAAAGATGGCAACGAATTGCGCGGCGCGCTGAAGGATGCGCTGTACGACT
TGATTAAGCCTCTGGAGAAGCCTTTGGTCTTGCCGGAAACCAAGGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGT
GCAGGCAAAACCACGTCTATCGGCAAACTGGCCAAATATTTCCAAGCGCAGGGCAAATCTGTGTTGCTGGCGGCAGGCGA
TACTTTCCGTGCCGCCGCGCGTGAGCAGCTTCAGGCTTGGGGCGAGCGCAACAATGTAACCGTGATTTCGCAAACCACAG
GCGATTCCGCAGCCGTTTGCTTCGATGCTGTCCAAGCCGCCAAAGCGCGTGGGATCGATATCGTGCTGGCTGATACAGCC
GGACGCCTGCCGACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGTTGCAAAAAGCCATGCCTGATGC
GCCACATGAAATCATCGTCGTGCTTGATGCCAACATTGGTCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACGAAGCTC
TGGGTCTGACCGGCCTTATCGTCACCAAACTCGACGGTACAGCCAAAGGCGGTATCCTTGCCGCCCTTGCCTCTGACCGC
CCAGTTCCTGTCCGCTATATCGGCGTAGGCGAAGGCATCGATGATTTGCGTCCGTTTAATGCCAAAGCGTTCGTGGATGC
CCTATTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(310-509)

SRP54-type protein, helical bundle domain (SRP54_N)

(225-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

84.39

80.392

0.678

Multiple sequence alignment