Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DV114_RS06190 Genome accession   NZ_CP031251
Coordinates   1291842..1293218 (+) Length   458 a.a.
NCBI ID   WP_107696932.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1286842..1298218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS06175 - 1287559..1289454 (+) 1896 WP_107696930.1 peptidoglycan DD-metalloendopeptidase family protein -
  DV114_RS06180 - 1289670..1291142 (+) 1473 WP_004520081.1 S41 family peptidase -
  DV114_RS06185 - 1291232..1291768 (+) 537 WP_107696931.1 hypothetical protein -
  DV114_RS06190 radA 1291842..1293218 (+) 1377 WP_107696932.1 DNA repair protein RadA Machinery gene
  DV114_RS06195 - 1293371..1294177 (+) 807 WP_107696933.1 DUF4198 domain-containing protein -
  DV114_RS06200 - 1294233..1294793 (-) 561 WP_107696934.1 pseudouridine synthase -
  DV114_RS06210 - 1295166..1295678 (+) 513 WP_234395580.1 hypothetical protein -
  DV114_RS06215 - 1295731..1296348 (+) 618 WP_114926261.1 4'-phosphopantetheinyl transferase superfamily protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49272.68 Da        Isoelectric Point: 6.9439

>NTDB_id=304989 DV114_RS06190 WP_107696932.1 1291842..1293218(+) (radA) [Neisseria subflava strain M18660]
MAKAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNHPIPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRHAKEFPNLKIYGVSSLQEAIDVCRDGD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=304989 DV114_RS06190 WP_107696932.1 1291842..1293218(+) (radA) [Neisseria subflava strain M18660]
ATGGCAAAAGCCCCCAAAACCATCTACCAATGTACCGAATGCGGCGGCACTTCCCCGAAATGGCAAGGCAAATGTCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTGGCCGCGCCCGAACCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAATCCCTCTCCGCCGTTACCGCCACCGAAGTGCCGCGTAATCCGACAGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGCCTGGTTGATGGAGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACATTACT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAAGAATCTGCCCAGCAGGTCGCCC
TGCGCGCGCAACGTTTGGAACTGCCTACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAAGCGGCG
TTGAAACAGCATCAGCCCGAAGTCGTGGTTATCGACTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
CTCCGTGTCGCAGGTACGCGAGTGCGCCGCCCAGCTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTTACCAAAGACGGAGCGATTGCCGGTCCGCGCGTTCTGGAACACATGGTCGATACCGTACTGTATTTCGAGGGC
GACCAGCATTCCAACTACCGTATGATACGCGCCATCAAAAACCGTTTCGGCGCTGCAAACGAATTGGGCGTGTTCGCCAT
GACCGAAAACGGTTTGAAAGGCGTATCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGACACACCCGGCTCAT
GTGTTTTGGTCACGCAGGAAGGCAGTCGCCCGCTTTTAGTCGAAATTCAGGCATTGGTCGATGACGCACACGGTTTTACC
CCCAAACGCCTCACCGTCGGCCTCGAACAAAACCGCCTCGCCATGCTGCTCGCCGTCCTCAACCGCCACGGCGGCATTGC
CTGCTTCGACCAAGACGTGTTCCTCAACGCCGTCGGCGGCGTCAAAATCGGCGAACCTGCCGCCGACCTTGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCACCCCATACCCGAAAAAACCGTGGTTTTCGGCGAAATCGGCCTAAGCGGCGAA
GTCCGCCCTGTCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCCATGCCAAAGAGTTTCCAAACCTGAAAATCTACGGCGTCAGCAGTTTGCAGGAAGCAATTGATGTTT
GTCGTGACGGGGACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.5
  radA Streptococcus pneumoniae Rx1

47.566

98.69

0.469
  radA Streptococcus pneumoniae D39

47.566

98.69

0.469
  radA Streptococcus pneumoniae TIGR4

47.566

98.69

0.469
  radA Streptococcus pneumoniae R6

47.566

98.69

0.469
  radA Streptococcus mitis NCTC 12261

46.93

99.563

0.467
  radA Streptococcus mitis SK321

47.45

98.472

0.467

Multiple sequence alignment