Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   DV114_RS03780 Genome accession   NZ_CP031251
Coordinates   752314..754077 (+) Length   587 a.a.
NCBI ID   WP_114926166.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 747314..759077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS03760 recR 749085..749690 (+) 606 WP_101755492.1 recombination mediator RecR -
  DV114_RS03765 - 749753..750040 (-) 288 WP_003683377.1 hypothetical protein -
  DV114_RS03770 - 750255..751505 (+) 1251 WP_003746931.1 lipoprotein-releasing ABC transporter permease subunit -
  DV114_RS03775 lolD 751498..752181 (+) 684 WP_003679081.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  DV114_RS03780 recD 752314..754077 (+) 1764 WP_114926166.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DV114_RS03785 - 754174..755373 (+) 1200 WP_114926167.1 hypothetical protein -
  DV114_RS03790 - 755467..755868 (-) 402 WP_003679090.1 RNA-binding S4 domain-containing protein -
  DV114_RS03795 - 756073..757032 (+) 960 WP_049333774.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  DV114_RS03800 tilS 757124..758458 (+) 1335 WP_070625346.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64982.16 Da        Isoelectric Point: 5.2157

>NTDB_id=304983 DV114_RS03780 WP_114926166.1 752314..754077(+) (recD) [Neisseria subflava strain M18660]
MNPTDSILSSAADAAIAFFRRHEVQGASVIEPYVVRLFAALQNGHSFIYLDKADVDALSNLPNLVGNADKPLILQGRKLF
LGRMWQLEHDLAVEIKRLASAEAEEVNFMAASKNLSDWFDPKDSKEQRDAAALALLQNFMLITGGPGTGKTTTVAKLLGL
ICNNSTKLPRIALAAPTGKAAAHMARALQRALDGFDLSPSIKAHLENLEGQTVHRLLKLRPPQMRPAFNHEYPLALDVLV
VDEASMLDLPLVLDLLRAVPTGCRLVLLGDENQLPSVGLGAVLAALSRPTALDKETAEKLEVYLPNHGFEIKEWPQALSQ
NNAKLTFSHRFGANSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKSGRLKEQVALLYQKQQDYWQAVAENNVALAYGHA
ADVVVLAAWRQDADDLNQAYQEYLQRQGKASGEMPWFSGQIIMITHNDYMLEVFNGDIGLIMKDEELLSGLSAYFPEKDG
FKKIAISRLPDFESAFAMTVHKSQGSEYREVWLLPPSVPATTESEEEARGLDKALLYTAITRARERFVFWGNAEELCQAV
GCHQKRRTALADALEWQFEQLDEQDSV

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=304983 DV114_RS03780 WP_114926166.1 752314..754077(+) (recD) [Neisseria subflava strain M18660]
ATGAATCCGACCGACTCTATCCTTTCCTCTGCCGCAGATGCGGCCATAGCGTTTTTCCGCCGCCACGAAGTACAGGGCGC
ATCCGTTATTGAGCCTTATGTGGTTCGACTGTTTGCAGCCTTGCAAAACGGGCATTCGTTTATTTACTTGGATAAAGCGG
ATGTTGATGCTTTAAGCAACTTGCCGAATTTGGTTGGTAATGCGGATAAACCGCTTATCCTGCAAGGTCGGAAATTGTTT
TTGGGGCGAATGTGGCAGTTGGAGCATGATTTGGCTGTTGAAATCAAACGGCTGGCAAGCGCAGAGGCGGAAGAAGTGAA
TTTCATGGCGGCTTCAAAAAACCTGAGTGATTGGTTTGATCCTAAAGACAGCAAAGAGCAGAGGGATGCTGCGGCTTTGG
CCTTGCTGCAAAACTTTATGCTGATTACCGGCGGGCCGGGTACGGGGAAGACGACGACCGTCGCAAAGCTTTTGGGTCTG
ATTTGCAATAACAGTACGAAGCTACCCCGTATCGCGTTGGCGGCACCGACGGGCAAAGCAGCTGCGCATATGGCACGGGC
TTTGCAGCGTGCTTTGGACGGTTTTGATTTGTCTCCGAGCATTAAAGCGCATTTGGAAAACTTGGAAGGGCAGACTGTCC
ATCGTTTGTTGAAACTGCGGCCGCCGCAAATGCGCCCTGCGTTCAATCATGAATATCCGCTTGCTTTGGATGTTTTGGTG
GTGGATGAGGCCTCAATGTTGGATTTGCCGCTGGTGTTGGATTTATTGCGCGCCGTGCCTACCGGTTGTCGTCTGGTGTT
GCTTGGTGATGAAAATCAGTTGCCGTCGGTTGGCTTGGGAGCTGTGTTGGCGGCATTGTCGCGTCCGACGGCTTTGGATA
AAGAAACCGCTGAAAAGCTGGAAGTGTACCTGCCCAATCATGGTTTTGAGATTAAAGAGTGGCCACAAGCTTTATCGCAA
AACAATGCCAAATTGACGTTCAGCCACCGTTTTGGTGCAAACAGCGGTATTGGTTGTTTGGCAAGGGCGGTGGTGTCCGG
GGAAAAGCAAACTGCGGTCGAACAGTTTGACAAGTTCCCCAAAGAATTGGAAATGAAATCAGGCCGTCTGAAAGAGCAGG
TTGCCTTGCTGTATCAAAAGCAACAGGATTATTGGCAGGCTGTGGCAGAGAATAATGTTGCACTCGCCTATGGTCATGCG
GCCGATGTGGTGGTATTGGCGGCTTGGCGGCAGGATGCGGATGATTTGAATCAGGCTTATCAAGAATACCTGCAACGACA
AGGCAAGGCTTCGGGCGAAATGCCTTGGTTTTCCGGACAAATCATCATGATTACGCACAATGATTACATGCTGGAAGTGT
TTAACGGCGACATCGGTCTGATTATGAAAGATGAAGAATTGTTGAGTGGCTTGTCTGCCTATTTTCCTGAGAAAGATGGA
TTCAAAAAAATTGCCATCAGCCGTTTGCCCGATTTTGAATCGGCTTTTGCCATGACGGTGCATAAGAGCCAAGGTTCGGA
ATATCGGGAAGTATGGCTGTTGCCCCCGTCAGTGCCTGCAACGACGGAAAGCGAAGAAGAAGCCCGAGGTTTGGATAAGG
CTCTGCTTTACACAGCCATTACCCGTGCGCGTGAACGTTTTGTGTTTTGGGGAAATGCGGAGGAATTATGTCAGGCTGTG
GGATGCCATCAAAAACGCAGGACGGCATTGGCCGATGCCTTGGAATGGCAGTTTGAACAGCTTGATGAGCAGGATTCTGT
TTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-546)

AAA domain (AAA_30)

(124-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

59.099

98.296

0.581

Multiple sequence alignment