Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   DV114_RS03060 Genome accession   NZ_CP031251
Coordinates   614508..618164 (-) Length   1218 a.a.
NCBI ID   WP_114926134.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 609508..623164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS03040 - 610333..611169 (-) 837 WP_107697117.1 DUF4198 domain-containing protein -
  DV114_RS03045 - 611422..612465 (+) 1044 WP_180947867.1 sulfate ABC transporter substrate-binding protein -
  DV114_RS03050 dinB 612543..613601 (+) 1059 WP_101755589.1 DNA polymerase IV -
  DV114_RS03055 - 613717..614448 (+) 732 WP_114926133.1 phosphoadenylyl-sulfate reductase -
  DV114_RS03060 recB 614508..618164 (-) 3657 WP_114926134.1 exodeoxyribonuclease V subunit beta Machinery gene
  DV114_RS03065 - 618309..622067 (-) 3759 WP_114926135.1 hemagglutinin repeat-containing protein -

Sequence

Protein


Download         Length: 1218 a.a.        Molecular weight: 138278.61 Da        Isoelectric Point: 5.6049

>NTDB_id=304978 DV114_RS03060 WP_114926134.1 614508..618164(-) (recB) [Neisseria subflava strain M18660]
MSSALPFDALTLSIDGTNLIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLNE
IQTLGGKLEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAALSQFDNASIYTIHGFCQRVLRDY
AFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDATLAQLVFDRKCTPEEMLAEIKSYTGRPYLKFRRPEGDLKEAQTN
LQETWEKICGQLEDLEKAFWAIFPKLNGQTYKRKTFENVFTDLKTNAESNRLPRLSKQTLEKLSLFSIDTLNIKLKKEYK
ADADTPEIIQLQALANLGRDLQAMKSAEEAVFICLQLDLLSYINQSIAEQKKSRRERVFDDLLLDVHQALTTNEHGNALA
KAAAANWEIALIDEFQDTDPLQYEIFRQIFIEQSCPLFLVGDPKQAIYSFRGADIYAYLQAAQDADRHYTLAVNYRSHAK
LINGISALFKQKKHPFVLENIDYSEVSASRAESRLSPHRPAIQVRWLNTDDQTGKDILRGRAAEYCADEIAFALNEAAEG
RLNFKGRALESSDIAVLVRTNNEAAMIAGKLKQRRIQSVLLSRQSVFDSAEADSLSALIGFWLNPRQTDWLRFVLTGVLF
GYTAKEIYELNHNEHQLLKWLESSAQAMEKWRKGGIFAAVQQFAALHDIETRLLKGGNERSLTNYYQILELLAEEDSQSR
NPAALYKWLNEQISRARSGHFPSDAQTIRLESDEKLVKIVTMHASKGLQYPLVYCPFAWDTKDNSKENWKILHTDNHETE
LLAKSQTSEAELSHLADEKTAEDLRLLYVALTRAEEQLNIYAAANKNCTPNNPFAYLLEGLPDAGRESVSQSYKSATNVV
EMLKTNWQRFIKNAPENTEFAFTEEAPLETVYQYSRQQDQALSAQSIKRRDFDFIRHTSFTGLSRHTKSTDEQHEPLQPA
IDPAESADRAMPSENLPSPLSDGLDIHHFPRGTNAGVCLHEMLEKLDFAASVESQSEMIAEVLQRHSFEDKWLPTVSTML
DTCRLTPLIGESLSQIPPTRRLPEMGFTLYMDDFKLDDLRRWFASSEANLPPECVQAAQLLDFHDLQGYLNGFIDMVCQD
SDGNVVLIDYKSNHLGNDASAYTQQAMNEAVAHHHYYLQALIYAVAIARYYALRGKPLPKIAIRYLFLRGMNGSDQGIWK
WDIDTALLSTFVERKTNS

Nucleotide


Download         Length: 3657 bp        

>NTDB_id=304978 DV114_RS03060 WP_114926134.1 614508..618164(-) (recB) [Neisseria subflava strain M18660]
ATGTCTTCCGCCCTGCCTTTTGACGCGCTCACCCTTTCCATCGACGGCACCAACCTCATCGAAGCTTCTGCCGGTACGGG
TAAAACCTACGGCATTGCCGCGCTCTTTACCCGACTGATTGTTTTAGAAAAAAAAGACATCGAGAAAATTCTGGTCGTTA
CCTTTACCAAAGCGGCGACGGCAGAACTGAAAACCCGGTTGCGCGCGCGTTTGGACGAAGTGTTGCAGGTTTTGAACGAA
ATCCAAACCTTGGGCGGCAAGCTGGAACATATTTCAGACGGCCTGAACAAATATTACGAAAAAGAGAAAAAATCCCCCGA
TGACTTTCTCAATCGCTTGATTCCTTTGGCTTTAGGCGAGCAAGACGGACAGGAAAGCTGCCATCGCCTGATTCTCCGCC
TCAAAGCCGCGCTGAGCCAGTTTGACAACGCCTCGATTTACACCATCCACGGCTTCTGTCAGCGTGTCTTGCGCGATTAC
GCGTTTTTGTGCGGTGCGCCTTTGGATGTCGAGCTGTCGGACGACTCACGCGAAAGGCTGCTGATTCCAGCGCAGGACTT
TTGGCGGCAGAAAGTGGCAACCGATGCCACATTGGCACAATTGGTTTTTGACCGAAAATGCACGCCAGAAGAAATGCTTG
CCGAAATCAAAAGCTATACCGGCCGCCCCTATCTGAAATTCAGACGGCCTGAAGGCGATTTAAAAGAAGCTCAAACCAAC
CTTCAAGAAACATGGGAAAAAATTTGCGGCCAGTTGGAAGACTTGGAAAAAGCGTTTTGGGCAATTTTTCCCAAACTGAA
CGGCCAAACCTACAAAAGAAAAACCTTTGAAAATGTTTTTACCGATTTAAAAACAAACGCCGAATCCAACCGTCTGCCCC
GCCTGAGCAAACAAACGCTGGAAAAATTAAGCCTCTTCAGTATCGACACGCTCAACATCAAACTGAAAAAAGAATATAAA
GCCGATGCCGATACGCCGGAAATTATTCAGCTGCAAGCCTTGGCTAATCTTGGTCGTGATTTGCAAGCAATGAAAAGCGC
GGAAGAAGCAGTCTTCATCTGCCTGCAACTCGACCTCCTTTCCTACATCAACCAATCCATTGCCGAACAAAAAAAATCAC
GCCGCGAGCGCGTGTTTGACGATTTGCTGCTGGACGTCCATCAGGCATTGACCACCAATGAGCACGGCAACGCATTGGCA
AAAGCGGCGGCAGCAAACTGGGAAATCGCGCTGATTGACGAATTCCAAGATACTGACCCGCTGCAATACGAAATTTTCCG
CCAAATTTTTATCGAACAAAGCTGCCCGCTGTTTCTCGTTGGCGACCCCAAGCAGGCGATTTACAGCTTTCGCGGTGCGG
ACATTTACGCCTATCTGCAAGCCGCGCAAGATGCGGATAGGCATTACACCCTCGCCGTCAACTACCGCAGCCATGCCAAG
CTGATCAACGGTATCAGCGCTTTATTCAAACAAAAAAAACACCCCTTCGTGTTGGAAAACATCGATTACAGCGAGGTCTC
CGCCAGCCGCGCCGAAAGCCGGCTGTCGCCACACCGCCCCGCCATCCAAGTGCGCTGGCTCAATACGGACGACCAAACCG
GTAAAGATATTTTGCGCGGCCGTGCCGCCGAATATTGCGCCGATGAAATTGCCTTTGCGCTCAATGAAGCAGCCGAAGGC
CGTCTGAACTTCAAAGGCCGCGCGCTGGAATCCAGCGACATTGCCGTCTTGGTGCGCACCAACAACGAAGCGGCGATGAT
TGCCGGAAAACTGAAACAGCGCCGTATCCAAAGCGTGTTACTGTCGCGCCAGTCCGTTTTCGATTCCGCCGAGGCAGACT
CGCTGTCCGCGCTGATCGGCTTTTGGCTCAACCCAAGGCAAACCGACTGGCTGCGCTTTGTCTTGACCGGCGTTTTATTC
GGCTATACCGCCAAAGAGATTTACGAACTCAACCACAACGAACACCAGCTGCTGAAATGGCTGGAGTCGTCTGCCCAAGC
CATGGAAAAATGGCGGAAAGGCGGCATTTTTGCCGCCGTGCAGCAGTTTGCCGCCCTACATGACATCGAAACACGCCTGC
TCAAAGGCGGCAACGAACGCAGCCTGACCAACTACTACCAAATTCTGGAGCTTTTGGCCGAAGAAGATAGCCAAAGCCGC
AACCCTGCCGCCCTATATAAATGGCTGAATGAACAAATCAGCCGTGCGCGCAGCGGCCATTTCCCTTCAGACGCGCAAAC
CATCCGTCTTGAAAGTGATGAAAAATTGGTCAAAATCGTTACCATGCACGCGTCAAAAGGTTTGCAATATCCTTTGGTTT
ACTGCCCCTTCGCATGGGATACCAAAGACAATTCCAAAGAAAACTGGAAAATCCTGCATACGGACAACCACGAAACCGAG
CTGCTGGCCAAATCGCAAACCTCGGAAGCAGAACTAAGCCACCTTGCCGACGAAAAGACGGCAGAAGATTTGCGCCTGCT
CTATGTCGCCCTTACCCGCGCCGAAGAACAGCTCAACATCTACGCCGCCGCCAACAAAAACTGTACGCCAAACAATCCTT
TTGCCTATTTGCTCGAAGGTTTGCCGGATGCCGGCCGCGAAAGCGTCAGCCAAAGCTATAAAAGTGCGACAAACGTTGTG
GAAATGCTCAAAACCAACTGGCAACGCTTTATCAAAAACGCGCCTGAAAATACGGAGTTTGCCTTCACGGAAGAAGCCCC
GCTGGAAACCGTCTACCAATACAGCCGCCAGCAAGACCAAGCCTTGAGCGCACAGAGCATTAAACGCCGCGATTTTGACT
TTATCCGCCACACCAGCTTTACCGGTTTGAGCCGGCATACCAAGTCAACCGACGAACAACACGAGCCTTTGCAACCTGCC
ATCGACCCGGCAGAAAGCGCAGACCGTGCCATGCCGTCTGAAAACCTGCCGTCCCCGCTTTCAGACGGCCTCGATATCCA
TCATTTCCCCCGCGGCACCAATGCCGGCGTATGTTTGCATGAAATGCTGGAAAAACTCGACTTCGCCGCCTCTGTCGAGA
GCCAATCCGAAATGATTGCCGAAGTTTTGCAACGCCATAGCTTTGAAGACAAATGGCTGCCAACGGTAAGCACCATGCTC
GACACCTGCCGCCTGACGCCTTTAATCGGCGAGAGCCTGTCGCAGATTCCGCCGACCCGACGCCTGCCCGAAATGGGGTT
CACCCTGTACATGGACGATTTCAAACTGGACGACTTACGCCGTTGGTTTGCCTCAAGCGAAGCAAACCTGCCGCCCGAAT
GCGTCCAAGCCGCGCAACTGCTTGATTTCCATGATTTACAAGGCTATTTGAACGGCTTTATCGATATGGTTTGCCAAGAT
TCAGACGGCAATGTCGTTTTAATCGACTACAAATCCAACCATTTGGGCAACGATGCAAGCGCGTATACGCAACAGGCGAT
GAACGAAGCCGTGGCGCATCATCACTACTACCTGCAAGCCCTGATCTACGCCGTTGCCATCGCGCGCTACTATGCCCTGC
GCGGCAAGCCCTTGCCCAAAATCGCCATCCGCTACCTCTTCCTGCGCGGCATGAACGGCTCGGATCAAGGCATCTGGAAA
TGGGACATCGATACCGCCCTGCTTTCCACTTTTGTCGAGCGAAAAACAAATTCTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(469-842)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(13-465)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1077-1190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.398

99.097

0.599

Multiple sequence alignment