Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   DV389_RS05245 Genome accession   NZ_CP031250
Coordinates   1056923..1059289 (+) Length   788 a.a.
NCBI ID   WP_114893292.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M21384     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1051923..1064289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV389_RS05220 (DV389_05220) - 1052270..1053568 (-) 1299 WP_114893290.1 N-acetylmuramoyl-L-alanine amidase -
  DV389_RS05225 (DV389_05225) tsaE 1053576..1054052 (-) 477 WP_105895229.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DV389_RS05230 (DV389_05230) folK 1054128..1054610 (-) 483 WP_005672262.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DV389_RS05235 (DV389_05235) pcnB 1054620..1055978 (-) 1359 WP_114893291.1 polynucleotide adenylyltransferase PcnB -
  DV389_RS05240 (DV389_05240) dksA 1056226..1056663 (-) 438 WP_005652560.1 RNA polymerase-binding protein DksA -
  DV389_RS05245 (DV389_05245) rec2 1056923..1059289 (+) 2367 WP_114893292.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DV389_RS05250 (DV389_05250) msbA 1059330..1061093 (+) 1764 WP_114893293.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DV389_RS05255 (DV389_05255) lpxK 1061166..1062164 (+) 999 WP_114893294.1 tetraacyldisaccharide 4'-kinase -
  DV389_RS05260 (DV389_05260) kdsB 1062235..1062999 (+) 765 WP_114893295.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89733.13 Da        Isoelectric Point: 9.9809

>NTDB_id=304961 DV389_RS05245 WP_114893292.1 1056923..1059289(+) (rec2) [Haemophilus influenzae strain M21384]
MKLNLITLAVLLIVADLTLLFLPQSLLLPWQVALVIALVLIFLFIFWRKNFLVSLAFFVASLGYFHHSALSLLQQAQRIT
AQKQMVTFEIQEILHQQDYQTLIATATLTNNLQEQRIFLNWKAKEAPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGSVKSAAKIADVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIMRRYYSPFQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILNLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFFLVPLILFAVFTNGAVFSWQLANKLAEGITGLISVFQGNWLTVSFNLALFLTALCAGIFMLIIWRIYREPE
ASPSTWKIKRPRFFTLNLSKPLLKNDQNNVLRCSFGIILLCFTILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYEENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKHRVLLTGDAEAKNEQIFARTLGKINVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYLVMERLQRYKSAVENTAISGQVRVNFFQDRLEIQQARTEFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=304961 DV389_RS05245 WP_114893292.1 1056923..1059289(+) (rec2) [Haemophilus influenzae strain M21384]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAGTCATTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTTTGGCGTAAAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCTTCTCTTGGCTATTTTCATCATTCGGCTTTGAGTTTATTACAACAAGCTCAACGTATTACC
GCTCAAAAGCAAATGGTGACTTTTGAGATTCAAGAAATTTTGCATCAACAGGATTATCAAACACTTATCGCCACAGCAAC
ATTAACGAATAACTTACAAGAGCAACGAATTTTTTTAAATTGGAAAGCAAAAGAGGCGCCTCAACTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCGCGATTAAATTTTGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAA
GGAATTACAGCTGTTGGAAGCGTAAAAAGTGCGGCGAAAATTGCTGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGGTTATCACTACAAGGTTTATTGATCGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAAACACTTGGTCAATTTACCAACAAACCAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTACTTGGCTCGTGTTGTGCAAGTATTTTTCCCAACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTCTTCGTTCAAATAATGAGGAGATATTATTCGCCTTTTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCACTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGTTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGTCCCTTTTCCCCAAAAGTGCGGTGGATTTTGAATTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGTTTATCGTTGAGTGGATTTTTAGCCAAT
CTTATGGCTGTTCCAATTTATAGTTTTTTCCTTGTGCCATTAATTTTATTTGCTGTTTTTACCAACGGCGCGGTTTTTTC
TTGGCAACTAGCAAATAAGCTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTATTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGCGTATTTATCGAGAACCAGAG
GCTTCACCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGCTAAAAAATGATCA
GAACAACGTTTTGCGATGTTCTTTCGGCATTATCTTACTGTGTTTTACTATTTTGTTGTTTAAACAATTGAGCAAACCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAATTAGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGATGATAACGATCATGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGAAAAAACTATGAGGAAAATTACCGCACTTTTTGTACTGCTGGACGTGATTGGCATTGGCAAGGG
CTACATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTTGATGA
TGGAAAGCATCGAGTTTTGCTGACGGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCCCGCACTTTAGGCAAAATTA
ATGTGTTGCAAGTGGGGCATCACGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTCGACCAGATGTGGCG
ATTATTTCTAGTGGACGTTGGAATCCGTGGAAATTCCCCCATTATTTGGTTATGGAAAGGCTTCAACGCTATAAAAGTGC
GGTAGAAAATACCGCTATTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACAGATTAGAAATCCAGCAAGCTCGCACAG
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(204-473)

Domain of unknown function (DUF4131) (DUF4131)

(29-172)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

93.782

100

0.938

Multiple sequence alignment