Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   DV389_RS02470 Genome accession   NZ_CP031250
Coordinates   498347..498643 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain M21384     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 493347..503643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV389_RS09080 - 494932..495041 (+) 110 Protein_482 hypothetical protein -
  DV389_RS02460 (DV389_02460) - 494999..497902 (+) 2904 WP_114893027.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  DV389_RS02465 (DV389_02465) - 498172..498354 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  DV389_RS02470 (DV389_02470) HI0659 498347..498643 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  DV389_RS02475 (DV389_02475) - 498810..500726 (+) 1917 WP_114893028.1 ABC transporter ATP-binding protein -
  DV389_RS02480 (DV389_02480) - 500736..501272 (+) 537 WP_114893029.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  DV389_RS02485 (DV389_02485) - 501288..501839 (+) 552 WP_114893030.1 Sua5/YciO/YrdC/YwlC family protein -
  DV389_RS02490 (DV389_02490) aroE 501843..502649 (+) 807 WP_114893031.1 shikimate dehydrogenase -
  DV389_RS02495 (DV389_02495) - 502661..503413 (+) 753 WP_105881307.1 DUF3800 domain-containing protein -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=304942 DV389_RS02470 WP_005650837.1 498347..498643(+) (HI0659) [Haemophilus influenzae strain M21384]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=304942 DV389_RS02470 WP_005650837.1 498347..498643(+) (HI0659) [Haemophilus influenzae strain M21384]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment