Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   DV378_RS06155 Genome accession   NZ_CP031249
Coordinates   1239359..1241725 (+) Length   788 a.a.
NCBI ID   WP_114934799.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M15895     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1234359..1246725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV378_RS06130 - 1234705..1236003 (-) 1299 WP_050949298.1 N-acetylmuramoyl-L-alanine amidase -
  DV378_RS06135 tsaE 1236011..1236487 (-) 477 WP_050949299.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DV378_RS06140 folK 1236563..1237045 (-) 483 WP_050949300.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DV378_RS06145 pcnB 1237055..1238413 (-) 1359 WP_050949301.1 polynucleotide adenylyltransferase PcnB -
  DV378_RS06150 dksA 1238662..1239099 (-) 438 WP_005652560.1 RNA polymerase-binding protein DksA -
  DV378_RS06155 rec2 1239359..1241725 (+) 2367 WP_114934799.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DV378_RS06160 msbA 1241766..1243529 (+) 1764 WP_050949303.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DV378_RS06165 lpxK 1243602..1244600 (+) 999 WP_048949883.1 tetraacyldisaccharide 4'-kinase -
  DV378_RS06170 kdsB 1244671..1245435 (+) 765 WP_048949884.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89639.19 Da        Isoelectric Point: 9.8845

>NTDB_id=304928 DV378_RS06155 WP_114934799.1 1239359..1241725(+) (rec2) [Haemophilus influenzae strain M15895]
MKLNLITLAVLLIVADLTLLFLPQSLLLPWQVALVIALVLIFLFIFWRKNFLVSLAFFVASLGYFHHSALSLLQQAQRIT
AQKQMVAFEIQEILHQQDYQTLIATATLTDNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYLSK
GITAVGTVKSAAKIADVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFMHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIMRRYYSPFQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILNLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFFLVPLILFAVFTNGAVFSWQLANKLAEGITGLISVFQGNWLTVSFNLALFLTALCAGIFMLIIWCIYRKQE
ASPSTWKIKRPRFFTLNLSKPLLKNERINVLLCSFGIILMCFMILLFKQLNKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGNMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKHSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVTERLQRYKSAVENTAISGQVRVNFFQDRLEIQQARTEFSPWYVRVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=304928 DV378_RS06155 WP_114934799.1 1239359..1241725(+) (rec2) [Haemophilus influenzae strain M15895]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGCTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAGTCATTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTTTGGCGTAAAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCTTCTCTTGGCTATTTTCATCATTCGGCTTTGAGTTTATTACAACAAGCTCAACGTATTACC
GCTCAAAAGCAAATGGTGGCTTTTGAGATTCAAGAAATTTTGCATCAACAGGATTATCAAACACTTATCGCCACAGCAAC
ATTGACGGATAACTTACAAGAGCAACGAATTTTTTTAAATTGGAAAGCAAAAGAGGTGCCTCAACTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCGCGATTAAATTTTGGTGGGTTTGATCGGCAACAATGGTATCTTTCAAAA
GGAATTACGGCTGTTGGAACCGTAAAAAGTGCGGCGAAAATTGCTGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGATTATCTCTACAAGGTTTATTGATCGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAAACACTTGGTCAATTTACCAACAAACGAATACCGCGCATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTACTTGGCTCGTGTTGTGCAAGTATTTTTCCCAACCCGTTTTATGCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCCTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTCTTCGTTCAAATAATGAGGAGATATTATTCGCCTTTTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCACTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGTTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGTCCCTTTTCCCCAAAAGTGCGGTGGATTTTGAATTTATTTCATTTGC
AATTTGGGTTATTGCTTTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGCTTATCGCTAAGTGGATTTTTAGCCAAT
CTTATGGCTGTTCCAATTTATAGTTTTTTCCTTGTGCCATTAATTTTATTTGCTGTTTTTACCAACGGCGCGGTTTTTTC
TTGGCAACTAGCAAATAAGCTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTATTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGTGTATTTATCGAAAACAAGAG
GCTTCACCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGCTATGTTCTTTCGGCATTATTCTTATGTGTTTTATGATTTTGTTGTTTAAACAATTGAACAAACCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAATATGGCTGAGTTGGAAATTTTGCCTTATTTGCAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCATGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGAAAAAACTATGGGGAAAATTACCGCACTTTTTGTACAGCTGGACGTGATTGGCATTGGCAAGGG
CTACATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGCATAGCGTTTTACTGACTGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCCCGCACTTTAGGAAAAATTG
ATGTGTTACAAGTGGGGCATCACGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTCGACCAGATGTGGCG
ATTATTTCTAGTGGACGTTGGAATCCGTGGAAATTCCCCCATTATTCGGTTACGGAAAGGCTTCAACGCTATAAAAGTGC
GGTAGAAAATACCGCTATTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAG
AATTTTCCCCTTGGTATGTGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Domain of unknown function (DUF4131) (DUF4131)

(29-172)

Competence protein (Competence)

(204-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

93.274

100

0.933

Multiple sequence alignment