Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DV378_RS03960 Genome accession   NZ_CP031249
Coordinates   799593..800246 (+) Length   217 a.a.
NCBI ID   WP_076773806.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M15895     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 794593..805246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV378_RS03935 - 795000..796004 (-) 1005 WP_050949419.1 ornithine carbamoyltransferase -
  DV378_RS03940 - 796419..797237 (+) 819 WP_021034534.1 Cof-type HAD-IIB family hydrolase -
  DV378_RS03945 crcB 797237..797623 (+) 387 WP_021034533.1 fluoride efflux transporter CrcB -
  DV378_RS03950 recX 797620..798078 (-) 459 WP_050949418.1 recombination regulator RecX -
  DV378_RS03955 recA 798157..799221 (-) 1065 WP_050848032.1 recombinase RecA Machinery gene
  DV378_RS03960 sxy/tfoX 799593..800246 (+) 654 WP_076773806.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25189.64 Da        Isoelectric Point: 9.8616

>NTDB_id=304909 DV378_RS03960 WP_076773806.1 799593..800246(+) (sxy/tfoX) [Haemophilus influenzae strain M15895]
MNIKDGHIDKVCSLLDLLVGNVTFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEDELATQLIKLGCEPFTTNELNKRFVL
SQYYALTEQVLRNNMLCRKLIILSIKQILEQKLEYTLRKLNRLKDLPNLTIKHERALIKVGITDVVMLREIGAENALVEL
KKNGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=304909 DV378_RS03960 WP_076773806.1 799593..800246(+) (sxy/tfoX) [Haemophilus influenzae strain M15895]
ATGAATATAAAGGATGGGCATATAGATAAAGTTTGCTCTTTGCTAGACCTGTTAGTAGGAAATGTTACCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATCTGGCAAAATAAAAAGCTTTATTTACGAGGTG
AAGATGAGCTTGCAACTCAATTAATAAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTACTGAACAGGTTTTACGTAATAATATGTTATGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATATACGTTAAGAAAGTTAAATCGATTAAAGGATTTACCCAATTTAACGATTAAACACG
AAAGAGCTTTAATAAAAGTTGGTATTACAGATGTTGTGATGCTAAGAGAAATTGGTGCAGAAAATGCATTGGTAGAATTA
AAGAAAAATGGCAGTGGTGCTACGCTTGATTTTTATTGGAAGTTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTGAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(19-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

91.705

100

0.917

Multiple sequence alignment