Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   DV378_RS03325 Genome accession   NZ_CP031249
Coordinates   683897..684193 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain M15895     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 678897..689193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV378_RS09795 - 680582..680713 (+) 132 WP_240030868.1 PT domain-containing protein -
  DV378_RS03315 - 680652..683576 (+) 2925 WP_240030869.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  DV378_RS03320 - 683716..683904 (+) 189 Protein_655 type II toxin-antitoxin system RelE/ParE family toxin -
  DV378_RS03325 HI0659 683897..684193 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  DV378_RS03330 - 684377..686293 (+) 1917 WP_050949050.1 ABC transporter ATP-binding protein -
  DV378_RS03335 - 686303..686839 (+) 537 WP_050949051.1 type I DNA topoisomerase -
  DV378_RS03340 - 686855..687406 (+) 552 WP_050949052.1 Sua5/YciO/YrdC/YwlC family protein -
  DV378_RS03345 aroE 687410..688228 (+) 819 WP_050949053.1 shikimate dehydrogenase -
  DV378_RS03350 - 688225..688782 (+) 558 WP_050949054.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=304907 DV378_RS03325 WP_005650837.1 683897..684193(+) (HI0659) [Haemophilus influenzae strain M15895]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=304907 DV378_RS03325 WP_005650837.1 683897..684193(+) (HI0659) [Haemophilus influenzae strain M15895]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCCTTGGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1

Multiple sequence alignment