Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   EW648_RS15855 Genome accession   NZ_CP035772
Coordinates   3162329..3164332 (+) Length   667 a.a.
NCBI ID   WP_000087268.1    Uniprot ID   -
Organism   Escherichia coli O145 strain RM8843-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3157329..3169332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW648_RS15835 (EW648_16300) eutP 3157670..3158149 (-) 480 WP_000820782.1 ethanolamine utilization acetate kinase EutP -
  EW648_RS15840 (EW648_16305) eutS 3158162..3158497 (-) 336 WP_001401155.1 ethanolamine utilization microcompartment protein EutS -
  EW648_RS15845 (EW648_16310) maeB 3158791..3161070 (-) 2280 WP_000342667.1 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase -
  EW648_RS15850 (EW648_16315) tal 3161359..3162309 (+) 951 WP_001003709.1 transaldolase -
  EW648_RS15855 (EW648_16320) recP/tkt 3162329..3164332 (+) 2004 WP_000087268.1 transketolase Machinery gene
  EW648_RS15860 (EW648_16325) ypfG 3164428..3165471 (-) 1044 WP_001270549.1 DUF1176 domain-containing protein -
  EW648_RS15865 (EW648_16330) nudK 3165597..3166172 (-) 576 WP_001358956.1 GDP-mannose pyrophosphatase NudK -
  EW648_RS15870 (EW648_16335) aegA 3166240..3168219 (-) 1980 WP_001078899.1 formate-dependent uric acid utilization protein AegA -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 73022.71 Da        Isoelectric Point: 6.2535

>NTDB_id=304894 EW648_RS15855 WP_000087268.1 3162329..3164332(+) (recP/tkt) [Escherichia coli O145 strain RM8843-C1]
MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFLKHNPTDPTWYDRDRFILSNGHASMLLYSLLHLTGYD
LPLEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEG
ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAVKEAILEAQSVKDKPSLI
ICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKLGWHHPPFEIPKDIYHAWDAREKGEKAQQSWNEKFAAYKKAHPQL
AEEFIRRMSGGLPKDWEKTTQKYINELQANPAKIATRKASQNTLNAYGPILPELLGGSADLAPSNLTIWKGSVSLKEDPA
GNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQAVEQLAS
LRLTPNFSTWRPCDQVEAAVGWKLAVERHNGPTALILSRQNLAQVERTPDQVKEIARGGYVLKDSGGKPDIILIATGSEM
EITLQAAEKLAGEGRNVRVVSLPSTDIFDAQDEEYRESVLPSNVAARVAVEAGIADYWYKYVGLKGAIVGMTGYGESAPA
DKLFPFFGFTAENIVAKAHKVLGVKGA

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=304894 EW648_RS15855 WP_000087268.1 3162329..3164332(+) (recP/tkt) [Escherichia coli O145 strain RM8843-C1]
ATGTCCCGAAAAGACCTTGCCAATGCGATTCGCGCACTCAGTATGGATGCGGTACAAAAAGCCAATTCTGGTCATCCCGG
CGCGCCGATGGGCATGGCTGATATTGCCGAAGTGCTGTGGAACGATTTTCTTAAACATAACCCTACCGACCCAACCTGGT
ATGATCGCGACCGCTTTATTCTTTCCAACGGTCACGCGTCGATGCTGCTCTACAGTTTGCTGCATCTGACCGGTTACGAC
CTGCCGCTGGAAGAGCTGAAGAACTTTCGTCAACTGCATTCGAAAACCCCTGGCCACCCGGAAATCGGCTATACGCCCGG
AGTTGAAACCACCACCGGTCCTCTTGGACAAGGTTTAGCGAACGCCGTCGGGCTGGCGATAGCGGAACGTACGCTGGCTG
CACAGTTTAACCAGCCAGACCATGAGATCGTCGATCACTTCACCTATGTGTTTATGGGCGACGGCTGCCTGATGGAAGGT
ATTTCCCACGAAGTCTGTTCGCTGGCGGGCACGCTGGGACTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTC
GATTGATGGAGAAACCGAAGGCTGGTTTACCGACGATACGGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCATG
AAATCGACGGTCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATT
ATCTGTCGTACGGTGATTGGCTTTGGATCGCCGAATAAAGCAGGTAAGGAAGAGGCGCACGGCGCACCGCTGGGGGAAGA
AGAAGTGGCGCTGGCACGGCAAAAACTGGGCTGGCACCATCCGCCATTTGAGATCCCTAAAGATATTTATCACGCCTGGG
ATGCCCGCGAAAAAGGCGAAAAAGCGCAGCAGAGCTGGAATGAGAAGTTTGCCGCCTATAAAAAGGCTCATCCGCAACTG
GCAGAAGAGTTTATCCGTCGGATGAGCGGTGGTTTACCGAAGGACTGGGAGAAAACGACTCAGAAATATATCAATGAGTT
ACAGGCAAATCCGGCGAAAATCGCTACCCGTAAGGCTTCGCAAAATACGCTTAACGCTTACGGGCCGATACTACCGGAGC
TGCTCGGCGGTTCGGCGGATCTGGCTCCCAGCAACCTGACCATCTGGAAAGGTTCTGTTTCGTTGAAGGAAGATCCGGCG
GGCAACTACATTCACTACGGGGTGCGTGAATTCGGCATGACCGCTATCGCCAACGGCATTGCGCACCACGGCGGCTTTGT
GCCGTATACCGCGACGTTCCTGATGTTTGTTGAATACGCCCGTAACGCCGCGCGGATGGCGGCACTGATGAAAGCACGGC
AGATTATGGTTTATACCCACGACTCAATTGGCCTGGGCGAAGATGGTCCGACGCACCAGGCTGTTGAGCAACTGGCCAGC
CTGCGCTTAACGCCAAATTTCAGCACCTGGCGACCGTGCGATCAGGTGGAAGCGGCGGTGGGCTGGAAGCTGGCGGTTGA
GCGCCACAACGGACCGACGGCACTGATTCTCTCCAGGCAGAATCTGGCCCAGGTGGAACGTACGCCGGATCAGGTTAAAG
AGATTGCTCGTGGCGGTTATGTGCTGAAAGACAGCGGCGGTAAGCCAGATATTATTTTGATTGCCACCGGTTCAGAGATG
GAAATCACCCTGCAAGCGGCGGAGAAATTAGCGGGAGAAGGTCGCAATGTTCGCGTAGTTTCCCTGCCCTCGACCGATAT
TTTCGACGCCCAGGATGAGGAATATAGGGAGTCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGTA
TTGCCGATTACTGGTACAAGTATGTTGGTCTGAAAGGGGCAATTGTCGGGATGACGGGTTACGGGGAATCTGCTCCGGCG
GATAAGCTGTTCCCGTTCTTTGGCTTTACCGCCGAGAATATTGTGGCAAAAGCGCATAAGGTGCTGGGAGTGAAAGGTGC
CTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(353-523)

Transketolase, C-terminal domain (Transketolase_C)

(539-654)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.344

98.801

0.468

Multiple sequence alignment