Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EW646_RS25260 Genome accession   NZ_CP035770
Coordinates   5120465..5120941 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli O145 strain RM8988-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5115465..5125941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW646_RS25230 (EW646_25895) - 5116593..5117015 (+) 423 Protein_4995 protein YeeR -
  EW646_RS25240 (EW646_25905) - 5118317..5118679 (+) 363 Protein_4997 IrmA family protein -
  EW646_RS25245 (EW646_25910) - 5118758..5118991 (+) 234 WP_001119729.1 DUF905 family protein -
  EW646_RS25250 (EW646_25920) - 5119091..5119909 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  EW646_RS25255 (EW646_25925) - 5119964..5120449 (+) 486 WP_000849571.1 antirestriction protein -
  EW646_RS25260 (EW646_25930) radC 5120465..5120941 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  EW646_RS25265 (EW646_25935) - 5121004..5121225 (+) 222 WP_000692311.1 DUF987 domain-containing protein -
  EW646_RS25270 (EW646_25940) - 5121388..5121756 (+) 369 WP_001280948.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EW646_RS25275 (EW646_25945) - 5121846..5122220 (+) 375 WP_000854753.1 TA system toxin CbtA family protein -
  EW646_RS25280 (EW646_25950) - 5122217..5122705 (+) 489 WP_000777552.1 DUF5983 family protein -
  EW646_RS25285 (EW646_25955) - 5122717..5122914 (+) 198 WP_000839281.1 DUF957 domain-containing protein -
  EW646_RS25290 (EW646_25960) - 5123011..5123571 (+) 561 WP_044869391.1 DUF4942 domain-containing protein -
  EW646_RS25295 (EW646_25965) - 5123597..5124810 (+) 1214 WP_136952279.1 IS3 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=304861 EW646_RS25260 WP_001186726.1 5120465..5120941(+) (radC) [Escherichia coli O145 strain RM8988-C1]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=304861 EW646_RS25260 WP_001186726.1 5120465..5120941(+) (radC) [Escherichia coli O145 strain RM8988-C1]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAGCCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGTTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392