Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DV129_RS05315 Genome accession   NZ_CP031247
Coordinates   990900..991631 (-) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M23734     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 985900..996631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV129_RS05280 blpC 986447..986602 (+) 156 WP_000358812.1 quorum-sensing system pheromone BlpC -
  DV129_RS05285 - 986646..987986 (-) 1341 WP_001099894.1 sensor histidine kinase -
  DV129_RS05290 comE/blpR 988000..988737 (-) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  DV129_RS05295 - 988742..989080 (-) 339 WP_000682136.1 LytTR family DNA-binding domain-containing protein -
  DV129_RS05300 - 989357..989686 (+) 330 WP_000132583.1 hypothetical protein -
  DV129_RS05310 - 989854..990903 (-) 1050 WP_000653769.1 ABC transporter permease -
  DV129_RS05315 pptA 990900..991631 (-) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  DV129_RS05320 - 991699..992109 (+) 411 WP_001278301.1 HIT family protein -
  DV129_RS05325 - 992119..992406 (+) 288 WP_000777760.1 hypothetical protein -
  DV129_RS11710 - 992568..992942 (+) 375 WP_001845059.1 hypothetical protein -
  DV129_RS05335 dnaJ 993264..994400 (-) 1137 WP_001836079.1 molecular chaperone DnaJ -
  DV129_RS05340 - 994605..994958 (-) 354 WP_000115730.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=304764 DV129_RS05315 WP_000889923.1 990900..991631(-) (pptA) [Streptococcus pneumoniae strain M23734]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=304764 DV129_RS05315 WP_000889923.1 990900..991631(-) (pptA) [Streptococcus pneumoniae strain M23734]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment