Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DV129_RS01695 Genome accession   NZ_CP031247
Coordinates   305548..306357 (+) Length   269 a.a.
NCBI ID   WP_114865959.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M23734     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 300548..311357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV129_RS12465 - 302047..302172 (-) 126 WP_001818232.1 hypothetical protein -
  DV129_RS01680 mutY 302269..303444 (+) 1176 WP_000886147.1 A/G-specific adenine glycosylase -
  DV129_RS01685 micA 303500..304204 (+) 705 WP_000722076.1 response regulator YycF Regulator
  DV129_RS01690 micB 304197..305546 (+) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DV129_RS01695 vicX 305548..306357 (+) 810 WP_114865959.1 MBL fold metallo-hydrolase Regulator
  DV129_RS01700 - 306448..306690 (+) 243 WP_012677101.1 DUF6290 family protein -
  DV129_RS01705 - 306692..306946 (+) 255 WP_001823540.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DV129_RS01710 - 306993..307736 (+) 744 WP_000725952.1 ion channel -
  DV129_RS01715 - 308026..309012 (-) 987 WP_000204727.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29928.86 Da        Isoelectric Point: 5.9895

>NTDB_id=304750 DV129_RS01695 WP_114865959.1 305548..306357(+) (vicX) [Streptococcus pneumoniae strain M23734]
MSEIGFKYSILASGSSGNSFYLETSKNKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTPTPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=304750 DV129_RS01695 WP_114865959.1 305548..306357(+) (vicX) [Streptococcus pneumoniae strain M23734]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
TAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAATAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCCCAACACCATTGAC
AGAGATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment