Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CCE_RS20765 Genome accession   NC_010546
Coordinates   4554064..4555701 (-) Length   545 a.a.
NCBI ID   WP_009543530.1    Uniprot ID   B1WTP7
Organism   Crocosphaera subtropica ATCC 51142     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4549064..4560701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCE_RS20740 (cce_4408) - 4549233..4549688 (+) 456 WP_009543536.1 hydrogenase maturation protease -
  CCE_RS20745 (cce_4409) menC 4549695..4550798 (+) 1104 WP_009543535.1 o-succinylbenzoate synthase -
  CCE_RS26775 - 4550844..4551255 (+) 412 Protein_4184 Uma2 family endonuclease -
  CCE_RS20755 (cce_4412) acsF 4551341..4552414 (+) 1074 WP_009543532.1 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase -
  CCE_RS20760 (cce_4413) - 4552599..4553963 (+) 1365 WP_009543531.1 cytochrome P450 -
  CCE_RS20765 (cce_4414) comA 4554064..4555701 (-) 1638 WP_009543530.1 DUF655 domain-containing protein Machinery gene
  CCE_RS20770 (cce_4415) - 4555836..4556711 (+) 876 WP_009543529.1 CbiQ family ECF transporter T component -
  CCE_RS20775 (cce_4416) - 4556799..4557545 (-) 747 WP_009543528.1 response regulator transcription factor -
  CCE_RS20780 (cce_4417) - 4557819..4559300 (+) 1482 WP_009543527.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  CCE_RS20785 (cce_4418) - 4559290..4559898 (-) 609 WP_009543526.1 DUF3318 domain-containing protein -
  CCE_RS20790 (cce_4419) - 4559926..4560120 (-) 195 WP_009543525.1 hypothetical protein -
  CCE_RS26055 - 4560274..4560438 (-) 165 WP_156922829.1 hypothetical protein -

Sequence

Protein


Download         Length: 545 a.a.        Molecular weight: 61759.78 Da        Isoelectric Point: 5.5551

>NTDB_id=30474 CCE_RS20765 WP_009543530.1 4554064..4555701(-) (comA) [Crocosphaera subtropica ATCC 51142]
MKRFYQKRLQFVGLLLFIFLGTIACDNSVKVERSQSLPQDPLIEVYFNLNQAQGANYRDPYRNIDRPGDNLEDIIINSIN
SAQSTIDIAVQEFRLPNIAQALVKQAKKGIKIRIILENNYHQSITDFTSEMITVMTRREKQRYDQYFQFIDINNDKQISS
QELNQRDALTILNQGNVPIIDDTEDGSKGTGLMHHKFIIIDNKIVIVTSANFTLSGIHGDFDNNQTRGNANNLLKIESSE
LAQLFTEEFDLMWGDGKGGEKNSKFGINKLNRLPKRIKIGQSEVTVKFSPNSSQDDWQFTTNGLISTVLNQAKSSINLAL
FVFSDQNIANTLETKNNQNINIKALIDPEFMFRYYSEGLDMLGVALSNDCQYEKDNQPWQKNINTVGVANLPQGDKLHHK
LAIIDDNIVITGSHNWSASANYQNDETLLIINNPIITAHYQQEFNRLYDNSTLGIPETINNKIQADIKNCPTLLTPKSVI
NQTEKINLNTASLEELETLPGIGRSLAERIIEVRKIRPFTSLEDLTRVKGIGNSKIKELEGEVSW

Nucleotide


Download         Length: 1638 bp        

>NTDB_id=30474 CCE_RS20765 WP_009543530.1 4554064..4555701(-) (comA) [Crocosphaera subtropica ATCC 51142]
ATGAAAAGATTTTATCAGAAAAGGTTACAGTTTGTTGGCTTATTATTATTCATATTTTTGGGAACAATAGCTTGTGATAA
TTCTGTAAAAGTTGAGCGATCGCAGTCTCTTCCACAAGATCCTTTAATTGAGGTCTATTTTAACCTAAATCAAGCCCAAG
GAGCGAATTATCGTGATCCTTATCGTAACATTGATCGCCCTGGTGATAATCTAGAAGATATTATTATTAATAGTATCAAT
TCTGCTCAATCTACTATTGATATTGCTGTTCAAGAATTTCGCCTTCCTAACATTGCCCAAGCCTTGGTTAAACAAGCAAA
AAAAGGTATAAAAATCCGCATTATTTTAGAAAACAATTATCATCAATCCATCACTGATTTTACTTCAGAAATGATTACGG
TAATGACAAGAAGGGAAAAACAAAGATATGATCAATATTTTCAATTTATTGATATTAATAATGATAAACAAATTAGCAGC
CAAGAACTTAATCAAAGAGATGCCTTAACTATTTTGAATCAAGGTAATGTTCCTATTATTGATGATACAGAAGATGGTTC
AAAAGGGACAGGTTTAATGCACCACAAATTTATCATTATTGATAATAAAATAGTGATTGTTACCTCAGCTAATTTTACCT
TAAGTGGAATTCATGGAGATTTTGATAATAACCAAACGAGAGGAAATGCTAATAACTTACTCAAAATTGAATCCTCAGAA
TTAGCACAACTTTTTACAGAAGAATTTGACTTGATGTGGGGCGATGGTAAAGGGGGAGAAAAAAATAGTAAATTTGGAAT
TAATAAATTGAACCGATTACCAAAAAGAATTAAGATAGGACAATCAGAAGTAACGGTTAAATTTTCTCCTAACTCCTCTC
AAGATGATTGGCAATTTACTACAAATGGATTAATCAGTACCGTATTAAATCAAGCAAAAAGTTCGATTAATTTAGCATTA
TTTGTTTTTAGTGACCAAAATATAGCTAACACTTTAGAAACAAAAAATAACCAAAACATTAATATTAAAGCATTAATTGA
TCCAGAATTTATGTTTCGTTATTATAGTGAGGGGTTAGATATGTTAGGGGTTGCTTTAAGCAATGATTGTCAGTATGAAA
AAGATAATCAACCTTGGCAAAAAAACATTAACACGGTTGGTGTTGCTAACCTTCCTCAAGGAGATAAATTACATCATAAA
TTGGCTATTATTGATGATAATATTGTTATTACAGGTTCTCACAATTGGTCAGCGTCAGCTAACTATCAAAACGATGAAAC
CTTATTGATTATCAATAATCCTATTATTACGGCGCATTATCAACAAGAATTTAATAGATTATATGATAATTCCACTTTAG
GAATTCCTGAAACTATTAATAATAAAATTCAAGCAGATATTAAAAATTGCCCTACATTATTAACACCGAAATCAGTAATA
AATCAAACAGAAAAAATAAATTTAAACACAGCTAGTTTAGAAGAATTGGAAACATTACCAGGAATTGGCAGATCCCTGGC
AGAAAGAATTATTGAAGTTCGTAAAATTCGACCTTTTACCTCTTTAGAAGACTTAACCAGAGTAAAAGGAATTGGAAACA
GTAAGATCAAAGAATTAGAAGGAGAAGTTAGTTGGTGA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(75-253)

PLD-like domain (PLDc_2)

(307-447)

Helix-hairpin-helix motif (HHH_3)

(483-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1WTP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

51.654

99.817

0.516

Multiple sequence alignment