Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EW649_RS09845 Genome accession   NZ_CP035768
Coordinates   1978332..1978808 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O145 strain RM11626-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1973332..1983808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW649_RS09815 (EW649_10080) - 1973496..1974401 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  EW649_RS09820 (EW649_10085) - 1974398..1975468 (+) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  EW649_RS09825 (EW649_10090) - 1975604..1976287 (+) 684 WP_016239564.1 hypothetical protein -
  EW649_RS09830 (EW649_10095) - 1976303..1976713 (+) 411 WP_000846713.1 hypothetical protein -
  EW649_RS09835 (EW649_10105) - 1976934..1977755 (+) 822 WP_025380451.1 DUF932 domain-containing protein -
  EW649_RS09840 (EW649_10110) - 1977837..1978316 (+) 480 WP_000860076.1 antirestriction protein -
  EW649_RS09845 (EW649_10115) radC 1978332..1978808 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  EW649_RS09850 (EW649_10120) yeeT 1978871..1979092 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  EW649_RS09855 (EW649_10125) cbeA 1979166..1979534 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EW649_RS09860 (EW649_10130) cbtA 1979623..1979996 (+) 374 Protein_1957 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EW649_RS09865 (EW649_10135) yeeW 1979993..1980187 (+) 195 WP_000988600.1 DUF5983 family protein -
  EW649_RS09870 (EW649_10140) - 1980233..1980313 (+) 81 Protein_1959 hypothetical protein -
  EW649_RS27575 (EW649_10145) - 1980602..1980775 (-) 174 WP_032082634.1 transposase domain-containing protein -
  EW649_RS09880 (EW649_10150) - 1980802..1980984 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  EW649_RS09885 (EW649_10155) tmaR 1981085..1981414 (-) 330 WP_000450409.1 DUF496 family protein -
  EW649_RS09890 (EW649_10160) yeeA 1981586..1982644 (-) 1059 WP_001200905.1 FUSC family protein -
  EW649_RS09895 (EW649_10165) sbmC 1982842..1983315 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=304730 EW649_RS09845 WP_001186773.1 1978332..1978808(+) (radC) [Escherichia coli O145 strain RM11626-C1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=304730 EW649_RS09845 WP_001186773.1 1978332..1978808(+) (radC) [Escherichia coli O145 strain RM11626-C1]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392