Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DV131_RS08955 Genome accession   NZ_CP031246
Coordinates   1681057..1681866 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain M26368     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676057..1686866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV131_RS08935 - 1678523..1679509 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  DV131_RS08940 - 1679769..1680421 (-) 653 Protein_1664 ion transporter -
  DV131_RS08945 - 1680468..1680722 (-) 255 WP_001812387.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DV131_RS08950 - 1680724..1680966 (-) 243 WP_000208080.1 DUF6290 family protein -
  DV131_RS08955 vicX 1681057..1681866 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  DV131_RS08960 micB 1681868..1683217 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DV131_RS08965 micA 1683210..1683914 (-) 705 WP_000722076.1 response regulator YycF Regulator
  DV131_RS08970 mutY 1683969..1685144 (-) 1176 WP_000886147.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=304725 DV131_RS08955 WP_001289493.1 1681057..1681866(-) (vicX) [Streptococcus pneumoniae strain M26368]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=304725 DV131_RS08955 WP_001289493.1 1681057..1681866(-) (vicX) [Streptococcus pneumoniae strain M26368]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTTGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment