Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VCD_RS00430 Genome accession   NC_012668
Coordinates   80335..80808 (+) Length   157 a.a.
NCBI ID   WP_001068477.1    Uniprot ID   Q9KUK8
Organism   Vibrio cholerae MJ-1236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 75335..85808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCD_RS00420 (VCD_001093) - 77432..79009 (-) 1578 WP_001230753.1 methyl-accepting chemotaxis protein -
  VCD_RS20960 - 79430..79708 (-) 279 WP_001883330.1 hypothetical protein -
  VCD_RS00430 (VCD_001095) radC 80335..80808 (+) 474 WP_001068477.1 RadC family protein Machinery gene
  VCD_RS00435 (VCD_001096) - 80805..81242 (+) 438 WP_000572493.1 DUF2787 domain-containing protein -
  VCD_RS00440 (VCD_001097) - 81293..81736 (+) 444 WP_000041081.1 DUF2787 domain-containing protein -
  VCD_RS00450 (VCD_001099) - 82055..82789 (+) 735 WP_000066839.1 WYL domain-containing protein -
  VCD_RS00455 (VCD_001100) - 82820..83188 (+) 369 WP_000176666.1 hypothetical protein -
  VCD_RS00460 (VCD_001101) - 83236..83463 (+) 228 WP_000749780.1 hypothetical protein -
  VCD_RS00465 (VCD_001102) - 83641..84921 (-) 1281 WP_001883323.1 peptidoglycan DD-metalloendopeptidase family protein -
  VCD_RS19835 - 85143..85343 (+) 201 WP_001883322.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17808.04 Da        Isoelectric Point: 5.2964

>NTDB_id=30462 VCD_RS00430 WP_001068477.1 80335..80808(+) (radC) [Vibrio cholerae MJ-1236]
MNPKTSEYQKQQRYQENEILEHAAEILANRYVRGDALTNPDATKEYVRCKLGSYEREVFALLLLDNQNRLIEFKELFQGT
VDAASVYPREVVKAVLEVNAAAVIFAHNHPSGDSTPSQADRRITERLKDTLALVDVRVLDHIVTGDTCTSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=30462 VCD_RS00430 WP_001068477.1 80335..80808(+) (radC) [Vibrio cholerae MJ-1236]
ATGAATCCCAAAACTTCCGAGTACCAAAAGCAGCAACGCTATCAGGAAAATGAAATCCTAGAGCATGCCGCTGAGATACT
AGCTAACCGCTACGTGCGTGGCGATGCCCTAACCAATCCTGATGCCACCAAAGAGTATGTACGCTGTAAGCTAGGCAGCT
ATGAACGTGAAGTGTTTGCCTTATTGCTACTGGATAACCAAAACCGACTGATTGAGTTTAAAGAGCTGTTTCAAGGAACG
GTGGATGCGGCCAGCGTTTACCCGCGAGAAGTGGTGAAAGCGGTGTTAGAAGTGAATGCCGCAGCAGTGATATTTGCCCA
TAACCATCCATCTGGAGACTCAACACCATCTCAAGCCGATAGACGAATAACAGAAAGACTCAAAGATACTTTAGCGCTGG
TGGATGTTCGCGTTCTCGACCATATCGTGACAGGCGATACCTGCACCTCATTTGCTGAAAGGGGGTGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KUK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.255

87.261

0.395

Multiple sequence alignment