Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ECE110019_RS13680 Genome accession   NZ_CP035751
Coordinates   2744310..2745737 (+) Length   475 a.a.
NCBI ID   WP_000980543.1    Uniprot ID   -
Organism   Escherichia coli E110019     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2739310..2750737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE110019_RS13645 - 2740016..2740108 (-) 93 Protein_2716 ATP-binding protein -
  ECE110019_RS27450 - 2740120..2740485 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  ECE110019_RS13660 tmaR 2740586..2740915 (-) 330 WP_000450409.1 DUF496 family protein -
  ECE110019_RS13665 yeeA 2741087..2742145 (-) 1059 WP_001200909.1 FUSC family protein -
  ECE110019_RS13670 sbmC 2742343..2742816 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  ECE110019_RS13675 dacD 2742935..2744101 (-) 1167 WP_000830138.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  ECE110019_RS13680 sbcB 2744310..2745737 (+) 1428 WP_000980543.1 exodeoxyribonuclease I Machinery gene
  ECE110019_RS13685 tsuB 2745780..2746007 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  ECE110019_RS13690 tsuA 2746021..2747079 (-) 1059 WP_000492320.1 thiosulfate utilization transporter TsuA/YeeE -
  ECE110019_RS13695 plaP 2747258..2748616 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  ECE110019_RS13700 yoeI 2748606..2748668 (-) 63 WP_010723108.1 membrane protein YoeI -
  ECE110019_RS13705 yeeY 2748882..2749811 (-) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  ECE110019_RS13710 yeeZ 2749857..2750681 (-) 825 WP_000754755.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54530.80 Da        Isoelectric Point: 5.3498

>NTDB_id=304583 ECE110019_RS13680 WP_000980543.1 2744310..2745737(+) (sbcB) [Escherichia coli E110019]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=304583 ECE110019_RS13680 WP_000980543.1 2744310..2745737(+) (sbcB) [Escherichia coli E110019]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCACATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGTAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATAAATAAATGCCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTACGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAAGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment