Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   DV428_RS08120 Genome accession   NZ_CP031243
Coordinates   1675744..1678110 (-) Length   788 a.a.
NCBI ID   WP_114909352.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19346     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1670744..1683110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV428_RS08105 kdsB 1672034..1672798 (-) 765 WP_114909349.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DV428_RS08110 lpxK 1672869..1673867 (-) 999 WP_114909350.1 tetraacyldisaccharide 4'-kinase -
  DV428_RS08115 msbA 1673940..1675703 (-) 1764 WP_114909351.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DV428_RS08120 rec2 1675744..1678110 (-) 2367 WP_114909352.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DV428_RS08125 dksA 1678370..1678807 (+) 438 WP_009766772.1 RNA polymerase-binding protein DksA -
  DV428_RS08130 pcnB 1679056..1680414 (+) 1359 WP_114909598.1 polynucleotide adenylyltransferase PcnB -
  DV428_RS08135 folK 1680423..1680905 (+) 483 WP_114909353.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DV428_RS08140 tsaE 1680981..1681457 (+) 477 WP_114909354.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DV428_RS08145 - 1681465..1682838 (+) 1374 WP_114909355.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89664.17 Da        Isoelectric Point: 9.7688

>NTDB_id=304583 DV428_RS08120 WP_114909352.1 1675744..1678110(-) (rec2) [Haemophilus haemolyticus strain M19346]
MKLNLITLAVLLIVADLTLLFLPQLLLLPWQVALVIALVLIFLFIFWRKHFLVSLAFFVAYLGYFHYSALSLLQQAQNIT
AQKQVVTFEIQEILHQQDYQTLIATATLANNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGTVKSAVKIADVLSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKTTWSIYQQTNTAHLIAISGLHIGLAM
AIGFYLARAVQVFLSTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFIQIIRRHYSPIQLFTVVVAFLIF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFPPKVRWIFSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LIAVPLYSFLLVPLILFAVFTNGAFFSWQFANKLAEVITGLISVFQGNWLTVSFNLALVLTALCSGIFMLIIWRIYREPE
VSSSNWQIKRAKFFTLNLSKPLLKNERINVLRCSFGIMSLCFMILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGPAWQGGNMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVEFITPSRKNYGENYRTFCTAGRDWDWQG
LHFQILSPHTIVTRADNPHSCVILVDDGKHSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLQRYKSAVENTAVSGQVRVNFFQDRLEIQQARTEFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=304583 DV428_RS08120 WP_114909352.1 1675744..1678110(-) (rec2) [Haemophilus haemolyticus strain M19346]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAACTGTTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTCTAATTTTTCTTTTTATTTTTTGGCGTAAACATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCCTATCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATTACAACAAGCTCAAAATATTACC
GCTCAAAAGCAAGTGGTGACGTTTGAGATCCAAGAAATTTTGCATCAACAGGATTATCAAACACTTATCGCCACAGCAAC
ATTGGCGAATAATTTGCAAGAACAACGAATTTTTTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCCTTACGTCCCCTTTCTGCGCGATTAAATTTTGGCGGATTTGATCGGCAACAATGGTATTTTTCAAAA
GGAATTACTGCTGTTGGAACGGTAAAAAGTGCGGTGAAAATTGCTGATGTTTTATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGGTTATCACTACAAGGTTTATTGATCGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAACCACTTGGTCAATTTACCAACAAACCAATACCGCGCATCTTATTGCCATTTCTGGCTTACATATTGGGTTGGCTATG
GCAATTGGATTTTACTTGGCGCGTGCTGTGCAAGTATTTTTATCCACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGTGTGCCCACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTCTTCATTCAAATAATAAGGCGACATTATTCGCCCATTCAGCTTTTTACGGTGGTTGTCGCTTTTTTGATTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGGGCGGTTGGGTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGCCCTTTTCCTCCAAAAGTGCGGTGGATTTTTAGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACACCTTTGCAACTTTTTCTATTTAATGGCTTATCGCTGAGTGGATTTTTAGCCAAT
CTTATCGCCGTTCCACTTTATAGCTTTTTGCTTGTTCCTTTGATTTTATTTGCTGTTTTTACCAACGGTGCGTTTTTTTC
TTGGCAATTTGCAAACAAGCTGGCTGAAGTGATTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTGGTTTTAACCGCACTTTGTAGCGGAATCTTTATGTTAATTATTTGGCGTATTTATCGAGAACCTGAG
GTTTCATCATCAAACTGGCAAATAAAACGAGCAAAATTTTTTACATTGAATCTCAGTAAACCCTTGCTAAAAAATGAACG
AATCAACGTTTTACGATGTTCTTTTGGCATTATGTCGCTTTGTTTTATGATTTTGTTATTTAAACAATTGAGCAAGCCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGTAAAGGGATTCTTTATGAT
ACAGGTCCAGCATGGCAAGGAGGAAATATGGCTGAATTAGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCATGACGATAACGATCACGCAGGTGGTGCTTCAACAATTTTAAAGGCGTATCCCAATGTGGAAT
TTATTACCCCTTCACGAAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGGATTGGCAAGGG
CTACATTTTCAAATACTTTCTCCTCACACCATTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGCATAGCGTTTTGCTGACTGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCCCGCACTTTAGGAAAAATTG
ATGTGTTACAAGTGGGGCATCACGGAAGTAAAACATCGACAAGTGAATATTTACTTTCCCAGGTTAGACCAGATGTGGCG
ATTATTTCTAGCGGACGTTGGAATCCGTGGAAATTTCCCCATTATTCGGTTATGGAAAGGCTTCAACGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCAGGGCAAGTGAGGGTAAATTTTTTTCAAGATCGATTAGAAATCCAACAAGCACGCACAG
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCGAAGGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(204-473)

Domain of unknown function (DUF4131) (DUF4131)

(29-171)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

93.528

100

0.935

Multiple sequence alignment