Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECE110019_RS13595 Genome accession   NZ_CP035751
Coordinates   2734774..2735250 (+) Length   158 a.a.
NCBI ID   WP_001186770.1    Uniprot ID   -
Organism   Escherichia coli E110019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2729774..2740250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE110019_RS13575 - 2730149..2732995 (+) 2847 WP_000820598.1 Ag43/Cah family autotransporter adhesin -
  ECE110019_RS13580 - 2733066..2733261 (+) 196 Protein_2703 DUF905 family protein -
  ECE110019_RS13585 - 2733379..2734197 (+) 819 WP_001234716.1 DUF932 domain-containing protein -
  ECE110019_RS13590 - 2734279..2734758 (+) 480 WP_000844095.1 antirestriction protein -
  ECE110019_RS13595 radC 2734774..2735250 (+) 477 WP_001186770.1 RadC family protein Machinery gene
  ECE110019_RS13600 yeeT 2735319..2735540 (+) 222 WP_000584198.1 DUF987 domain-containing protein -
  ECE110019_RS13605 - 2735703..2736071 (+) 369 WP_024184487.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECE110019_RS13610 - 2736161..2736538 (+) 378 WP_000854757.1 TA system toxin CbtA family protein -
  ECE110019_RS13615 - 2736535..2736684 (+) 150 Protein_2710 DUF5983 family protein -
  ECE110019_RS13620 - 2736784..2736864 (+) 81 Protein_2711 hypothetical protein -
  ECE110019_RS13625 istB 2737020..2737490 (-) 471 Protein_2712 IS21-like element ISEc12 family helper ATPase IstB -
  ECE110019_RS13630 - 2737578..2738003 (+) 426 WP_000422741.1 transposase -
  ECE110019_RS13635 tnpB 2738000..2738350 (+) 351 WP_000624722.1 IS66 family insertion sequence element accessory protein TnpB -
  ECE110019_RS13640 - 2738381..2739994 (+) 1614 WP_016236744.1 IS66-like element ISEc23 family transposase -
  ECE110019_RS13645 - 2740016..2740108 (-) 93 Protein_2716 ATP-binding protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17702.32 Da        Isoelectric Point: 7.2020

>NTDB_id=304582 ECE110019_RS13595 WP_001186770.1 2734774..2735250(+) (radC) [Escherichia coli E110019]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=304582 ECE110019_RS13595 WP_001186770.1 2734774..2735250(+) (radC) [Escherichia coli E110019]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392