Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DV428_RS03715 Genome accession   NZ_CP031243
Coordinates   717250..718203 (+) Length   317 a.a.
NCBI ID   WP_114908728.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19346     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 712250..723203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV428_RS03700 - 713006..714373 (+) 1368 WP_114908726.1 L-serine ammonia-lyase -
  DV428_RS03705 - 714514..715648 (+) 1135 Protein_704 IS3 family transposase -
  DV428_RS03710 gorA 715712..717082 (-) 1371 WP_114908727.1 glutathione-disulfide reductase -
  DV428_RS03715 ceuB 717250..718203 (+) 954 WP_114908728.1 ABC transporter permease Machinery gene
  DV428_RS03720 - 718196..719155 (+) 960 WP_114908729.1 iron chelate uptake ABC transporter family permease subunit -
  DV428_RS03725 - 719146..719913 (+) 768 WP_114908730.1 ATP-binding cassette domain-containing protein -
  DV428_RS03730 - 720144..721052 (+) 909 WP_114908731.1 siderophore ABC transporter substrate-binding protein -
  DV428_RS09650 - 721269..722546 (+) 1278 WP_208623868.1 TonB-dependent receptor plug domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35043.15 Da        Isoelectric Point: 10.1497

>NTDB_id=304574 DV428_RS03715 WP_114908728.1 717250..718203(+) (ceuB) [Haemophilus haemolyticus strain M19346]
MFKRRYLVFLLVLLSAISLFLGISTVNLQGLLHFKGNQWQIFLDSRVPRLVSILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILLAILFFPGASILLKTTIAVLVSFLGSLLFMMILSRLKFKDTIFVPLVGMMFGNIISSITAFIAYQQDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPMLIVSYLFAHRFSIVGMGKDFATNLGLNYNQVLYVGLMIVATVSSMIIVSVG
VIPFLGLIVPNLVTLYLGDNLKKNLSHTALLGAVFVLFCDILGRSLIYPYEISINAVVGVIGSGIFLYFLLKRERYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=304574 DV428_RS03715 WP_114908728.1 717250..718203(+) (ceuB) [Haemophilus haemolyticus strain M19346]
ATGTTTAAACGGCGATACTTAGTTTTTCTATTAGTTTTACTTTCCGCTATTTCTCTTTTTCTTGGCATAAGTACGGTTAA
TTTACAGGGCTTGCTGCATTTTAAAGGTAATCAATGGCAGATTTTTCTTGATAGTCGCGTACCGCGTTTGGTGAGTATTT
TGATTGCGGGCGCGTCGTTGAGTATTTGTGGCTTGGTGATGCAGCAACTGAGCCGCAATCGTTTTGTATCGCCAACAACC
GCCGGCACAATGGATAGCGCGCGTCTTGGGATTTTGCTGGCGATTCTATTTTTTCCAGGTGCCTCGATACTGCTGAAAAC
CACTATCGCGGTACTGGTGTCTTTCCTTGGCTCGCTGTTATTTATGATGATCCTATCCCGCCTGAAGTTCAAAGATACGA
TTTTTGTACCTTTAGTAGGGATGATGTTCGGCAATATCATTAGTTCGATCACTGCTTTTATCGCCTATCAACAAGATTTG
TTGCAGAACCTTTCTGGCTGGTTACAAGGAGATTTTTCTCTTGTCATGAGCGGCCGCTACGAGTTGCTTTATTTCAGCAT
CCCTATGTTGATTGTGTCTTATCTGTTTGCGCATCGTTTTTCTATCGTCGGAATGGGGAAAGATTTTGCTACCAATCTCG
GCTTAAATTATAACCAAGTGCTTTATGTTGGCCTGATGATTGTGGCAACGGTGTCGTCGATGATTATTGTATCTGTCGGG
GTAATTCCTTTTTTAGGCTTGATTGTGCCGAATCTCGTCACATTATATTTGGGTGATAACTTGAAAAAAAATCTTTCTCA
CACCGCACTTTTAGGTGCTGTTTTTGTGTTGTTCTGCGATATTTTGGGGCGCAGCCTAATTTACCCTTACGAGATTTCTA
TTAATGCTGTCGTTGGCGTGATTGGCAGCGGCATTTTCTTATATTTCTTACTGAAACGGGAGCGTTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

98.738

0.536

Multiple sequence alignment