Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECE110019_RS02760 Genome accession   NZ_CP035751
Coordinates   589589..590194 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli E110019     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584589..595194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE110019_RS02740 aes 584626..585585 (+) 960 WP_000801832.1 acetyl esterase -
  ECE110019_RS02745 hemH 585582..586544 (-) 963 WP_001250125.1 ferrochelatase -
  ECE110019_RS02750 adk 586780..587424 (-) 645 WP_001220233.1 adenylate kinase -
  ECE110019_RS02755 htpG 587605..589479 (-) 1875 WP_000678194.1 molecular chaperone HtpG -
  ECE110019_RS02760 recR 589589..590194 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECE110019_RS02765 ybaB 590194..590523 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ECE110019_RS02770 dnaX 590576..592507 (-) 1932 WP_000122007.1 DNA polymerase III subunit gamma/tau -
  ECE110019_RS02775 apt 592636..593187 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ECE110019_RS02780 ybaN 593340..593717 (-) 378 WP_001188905.1 DUF454 family protein -
  ECE110019_RS02785 priC 593787..594314 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  ECE110019_RS02790 rsmS 594328..594489 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  ECE110019_RS27610 - 594542..594640 (-) 99 Protein_555 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=304558 ECE110019_RS02760 WP_001195025.1 589589..590194(-) (recR) [Escherichia coli E110019]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=304558 ECE110019_RS02760 WP_001195025.1 589589..590194(-) (recR) [Escherichia coli E110019]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443