Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DV428_RS00440 Genome accession   NZ_CP031243
Coordinates   84597..86126 (-) Length   509 a.a.
NCBI ID   WP_114908303.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19346     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 79597..91126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV428_RS00420 xylB 80769..82250 (+) 1482 WP_162790753.1 xylulokinase -
  DV428_RS00425 rfaD 82301..83227 (-) 927 WP_114908300.1 ADP-glyceromanno-heptose 6-epimerase -
  DV428_RS00430 - 83280..83783 (-) 504 WP_114908301.1 protein disulfide oxidoreductase -
  DV428_RS00435 deoC 83892..84563 (+) 672 WP_114908302.1 deoxyribose-phosphate aldolase -
  DV428_RS00440 comM 84597..86126 (-) 1530 WP_114908303.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DV428_RS00445 yihA 86242..86859 (-) 618 WP_005632793.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DV428_RS00450 - 86962..87828 (+) 867 WP_114908304.1 VirK/YbjX family protein -
  DV428_RS00455 tal 87952..88905 (+) 954 WP_114908305.1 transaldolase -
  DV428_RS00460 aspA 88989..90407 (-) 1419 WP_114908306.1 aspartate ammonia-lyase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55879.39 Da        Isoelectric Point: 9.6696

>NTDB_id=304553 DV428_RS00440 WP_114908303.1 84597..86126(-) (comM) [Haemophilus haemolyticus strain M19346]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLIFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLCDKDAFFLENALNKLGLSIRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=304553 DV428_RS00440 WP_114908303.1 84597..86126(-) (comM) [Haemophilus haemolyticus strain M19346]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCACCACTTGTCACTATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACGGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCATTGA
TGAATGCACAATTTAAATACCCAGCCAAACGCATTACCGTGAATCTCGCACCTGCGGATTTACCGAAAGAAGGTGGGCGA
TTTGATTTGCCTATTGCCATCGGGATTTTAGCCGCATCGGATCAGCTTGATGCGAGCCGTTTAAAGCAATTTGAATTTGT
GGCAGAGCTTGCGCTGACGGGGCAATTACGTGGCGTTCATGGTGTAATCCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAGCAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCGCAAACGCTT
TTAGATGTGGTGCAATTTCTCAATGGTCAGGAAAAATTACCCCTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCGGGTAAAAATACGTTAGATTTAACGGATATTATCGGACAACAACACGCCAAACGAGCATTGACCATTGCCGCAGCAG
GGCAGCATAATTTGATCTTTCTTGGTCCGCCAGGTACAGGGAAAACCATGCTAGCTAGCCGCTTGACGGGGCTTTTACCT
GAAATGACAGATTTAGAAGCGATTGAAACTGCATCCGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCCCCGCATCATAGTGCATCAATGCCGGCTTTAGTTGGTGGCGGAACGATACCAAAACCCGGTG
AAATATCCTTAGCAACAAATGGCGTACTTTTTCTTGATGAACTTCCAGAGTTTGAACGAAAAGTATTGGATGCACTACGT
CAGCCTTTAGAAAGTGGTGAGATTATTATTTCTCGTGCTAATGCAAAAATTCAATTCCCTGCTCGTTTTCAATTAGTAGC
AGCGATGAATCCAAGTCCGACAGGCCATTATACTGGAACACATAACCGCACTTCACCCCAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTACTGCCACAAGGTAGCTTACAAAAT
ACAGGTGATCGTGGCGAAACCAGCGCGCAAGTACGAGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCGGG
AAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAACGTGATTGCAAGTTATGTGATAAAGATGCTTTTTTCCTTGAAA
ATGCGCTGAATAAACTGGGGCTTTCTATACGGGCTTACCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGCGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCCTGGGCTATCGCGCAATGGATCGTTTGTTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

98.625

100

0.986
  comM Glaesserella parasuis strain SC1401

78.895

99.607

0.786
  comM Vibrio cholerae strain A1552

67.456

99.607

0.672
  comM Vibrio campbellii strain DS40M4

66.272

99.607

0.66
  comM Legionella pneumophila str. Paris

50.895

98.821

0.503
  comM Legionella pneumophila strain ERS1305867

50.895

98.821

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.379

100

0.479

Multiple sequence alignment