Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DV390_RS03855 Genome accession   NZ_CP031242
Coordinates   785534..786250 (-) Length   238 a.a.
NCBI ID   WP_042593718.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M21460     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 780534..791250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV390_RS03835 nrdR 780641..781090 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  DV390_RS03840 recC 781145..784510 (-) 3366 WP_042593721.1 exodeoxyribonuclease V subunit gamma -
  DV390_RS03845 comQ 784556..784843 (-) 288 WP_042593720.1 DUF5374 domain-containing protein Machinery gene
  DV390_RS03850 comP 784836..785519 (-) 684 WP_042593719.1 DUF2572 family protein Machinery gene
  DV390_RS03855 comO 785534..786250 (-) 717 WP_042593718.1 PulJ/GspJ family protein Machinery gene
  DV390_RS03860 comN 786250..786762 (-) 513 WP_013526183.1 pilus assembly FimT family protein Machinery gene
  DV390_RS03865 suhB 786962..787765 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  DV390_RS03870 nrfE 787874..789781 (+) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -
  DV390_RS03875 - 789781..790311 (+) 531 WP_005688388.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26759.16 Da        Isoelectric Point: 9.6935

>NTDB_id=304526 DV390_RS03855 WP_042593718.1 785534..786250(-) (comO) [Haemophilus influenzae strain M21460]
MMKVLLKGKTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=304526 DV390_RS03855 WP_042593718.1 785534..786250(-) (comO) [Haemophilus influenzae strain M21460]
ATGATGAAAGTATTATTAAAAGGGAAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGTTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACCTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment