Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   DV384_RS08725 Genome accession   NZ_CP031241
Coordinates   1760316..1760603 (+) Length   95 a.a.
NCBI ID   WP_012055313.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M17648     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1755316..1765603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV384_RS08700 nrfE 1755378..1757285 (-) 1908 WP_042611089.1 heme lyase NrfEFG subunit NrfE -
  DV384_RS08705 suhB 1757394..1758197 (-) 804 WP_114890559.1 inositol-1-monophosphatase -
  DV384_RS08710 comN 1758397..1758909 (+) 513 WP_112103684.1 type II secretion system protein Machinery gene
  DV384_RS08715 comO 1758909..1759625 (+) 717 WP_005651546.1 type II secretion system protein J Machinery gene
  DV384_RS08720 comP 1759640..1760323 (+) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  DV384_RS08725 comQ 1760316..1760603 (+) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  DV384_RS08730 recC 1760649..1764029 (+) 3381 WP_114890558.1 exodeoxyribonuclease V subunit gamma -
  DV384_RS08735 nrdR 1764084..1764533 (+) 450 WP_005648026.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11021.82 Da        Isoelectric Point: 9.2205

>NTDB_id=304516 DV384_RS08725 WP_012055313.1 1760316..1760603(+) (comQ) [Haemophilus influenzae strain M17648]
MNKGMSFITLLFSLALFSVLFLVFNQWTASQRKSAVKTYQDFQAIQIAENQAQRQFLGLACEQLIQQNGLTFRIQCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=304516 DV384_RS08725 WP_012055313.1 1760316..1760603(+) (comQ) [Haemophilus influenzae strain M17648]
ATGAATAAAGGAATGTCTTTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTAAAAACTTATCAAGATTTTCAGGCAATACAGATTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCAATGTGAAAATGAACGT
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

97.895

100

0.979

Multiple sequence alignment